Items where Subject is "Genetics"

2025

Chen, S. H., Yap, J.‐Y. S., Viler, V., Stehn, C., Sandhu, K. S., Percival, J., Pegg, G. S., Menzies, T., Jones, A., Guo, K., Giblin, F. R., Cohen, J., Edwards, R. J., Rossetto, M. and Bragg, J. G. (2025) Pathways to Recovery: Genomics and Resistance Assays for Tree Species Devastated by the Myrtle Rust Pathogen. Molecular Ecology , mec.70030. https://doi.org/10.1111/mec.70030

Chen, X., Sun, J., Shan, N., Ali, A., Luo, S., Wang, S., Zhu, Q. and et, a. (2025) DaMYB75 and DaMYB56 antagonistically regulate anthocyanin biosynthesis by binding to the DaANS promoter in Dioscorea alata. The Crop Journal . https://doi.org/10.1016/j.cj.2025.03.009

Cooper, T., Phillips, A., Daniells, J. W., Stewart, Z., Matovu, M., Harding, R., Dale, J. L. and Paul, J.-Y. (2025) Towards Iron Biofortification of Banana (Musa spp.): A Comparative Study of Fruit Mineral Micronutrient Concentrations and Phylogenetic Insights Into Iron Homeostasis. Food and Energy Security, 14 (3). e70104. https://doi.org/10.1002/fes3.70104

Crous, P.W., Catcheside, D.E.A., Catcheside, P.S., Alfenas, A.C., Alfenas, R.F., Barreto, R.W., Lebel, T., Balashov, S., Broadbridge, J., Jurjevic, Z., De la Peña-Lastra, S., Hoffmann, R., Mateos, A., Riebesehl, J., Shivas, R. G., Soliz Santander, F.F., Tan, Y. P., Altés, A., Bandini, D., Carriconde, F., Cazabonne, J., Czachura, P., Gryta, H., Eyssartier, G., Larsson, E., Pereira, O.L., Rigueiro-Rodríguez, A., Wingfield, M.J., Ahmad, W., Bibi, S., Denman, S., Esteve-Raventós, F., Hussain, S., Illescas, T., Luangsa-ard, J.J., Möller, L., Mombert, A., Noisripoom, W., Olariaga, I., Pancorbo, F., Paz, A., Piatek, M., Polman-Short, C., Suárez, E., Afshan, N.S., Ali, H., Arzanlou, M., Ayer, F., Barratt, J., Bellanger, J.-M., Bidaud, A., Bishop-Hurley, S. L., Bohm, M., Bose, T., Campo, E., Chau, N.B., Colak, Ö.F., Cordeiro, T.R.L., Cruz, M.O., Custódio, F.A., Couceiro, A., Darmostuk, V., Dearnaley, J.D.W., de Azevedo Santiago, A.L.C.M., de Freitas, L.W.S., Yanez-Morales, M. d. J., Domnauer, C., Dentinger, B., Dhileepan, K., De Souza, J.T., Dovana, F., Eberhardt, U., Eisvand, P., Erhard, A., Fachada, V., García-Martín, A., Groenewald, M., Hammerbacher, A., Harms, K., Haroon, S., Haqnawaz, M., Henriques, S., Hernandez, A.J., Jacobus, L.M., Jaen-Contreras, D., Jangsantear, P., Kaygusuz, O., Knoppersen, R., Kumar, T.K.A., Lynch, M.J., Mahiques, R., Maraia, G.L., Marbach, P.A.S., Mehrabi-Koushki, M., Miller, P.R., Mongkolsamrit, S., Moreau, P.-A., Oberlies, N.H., Oliveira, J.A., Orlovich, D., Pérez-Méndez, A.S., Pinto, A., Raja, H.A., Ramírez, G.H., Raphael, B., Rodrigues, A., Rodrigues, H., Ramos, D.O., Safi, A., Sarwar, S., Saar, I., Sanchez, R.M., Santana, J.S., Scrace, J., Sales, L.S., Silva, L.N.P., Stryjak-Bogacka, M., Tacconi, A., Thanh, V.N., Thomas, A., Thuy, N.T., Toome, M., Valdez-Carrazco, J.M., van Vuuren, N.I., Vasey, J., Vauras, J., Vila-Vicosa, C., Villarreal, M., Visagie, C.M., Vizzini, A., Whiteside, E.J. and Groenewald, J.Z. (2025) Fungal Planet description sheets: 1781–1866. Persoonia - Molecular Phylogeny and Evolution of Fungi . https://doi.org/10.3114/persoonia.2025.54.10

Dudley, C., Van Haeften, S., Alahmad, S., Dinglasan, E., Hickey, L. T., Robinson, H., Beveridge, C., Udvardi, M., Noble, T., Massel, K., Dun, E. A. and Smith, M. R. (2025) Time to flowering and flowering duration in mungbean are unrelated physiological traits with independent genetic controls. Journal of Experimental Botany . https://doi.org/10.1093/jxb/eraf222

George, J., Pramanik, I., Sanewski, G. M., Nguyen, T., Pun, S., Edwards, D., Currie, M., Moller, S., Hardner, C., Lyons, P. and Smyth, H. E. (2025) Relationship between Key Aroma Compounds and Sensory Attributes of Australian Grown Commercial Pineapple Cultivars. Journal of Agricultural and Food Chemistry, 73 , 10. pp. 5839-5849. https://doi.org/10.1021/acs.jafc.4c12482

Jordan, D.R., Klein, R.R., Melonek, J., Small, I., Cruickshank, A., Bradburn, L., Malory, S., Tao, Y., Hathorn, A., Hunt, C. H., Amenu, L.T. and Mace, E. S. (2025) The genetic architecture of temperature-induced partial fertility restoration in A1 cytoplasm in sorghum (Sorghum bicolor (L.) Moench). Theoretical and Applied Genetics, 138 (7). https://doi.org/10.1007/s00122-025-04946-4

Kang, Y., Alahmad, S., Haeften, S. V., Akinlade, O., Tong, J., Dinglasan, E., Voss-Fels, K. P., Potgieter, A. B., Borrell, A. K., Makhoul, M., Obermeier, C., Snowdon, R., Mace, E. S., Jordan, D. R. and Hickey, L. T. (2025) Mapping quantitative trait loci for seminal root angle in a selected durum wheat population. The Plant Genome, 18 (1). e20490. https://doi.org/10.1002/tpg2.20490

Luo, Z., Feng, J., Bird, A., Moeller, M., Tam, R., Shepherd, L., Murphy, L., Singh, L., Graetz, A., Amorim, L., Massola Júnior, N. S., Prodhan, M. A., Shuey, L. S., Beattie, D., Gonzalez, A. T., Tobias, P., Padovan, A., Kimber, R. B. E., McTaggart, A. R., Kehoe, M., Schwessinger, B. and Boufleur, T. R. (2025) Eight novel diagnostic markers differentiate lineages of the highly invasive myrtle rust pathogen Austropuccinia psidii. Plant Disease, 109 (4). pp. 770-778. https://doi.org/10.1094/PDIS-10-24-2111-SR

Mayer, D. G. (2025) Macadamia Crop Forecasting 2023 - 2025. Project Report. Hort Innovation.

Ofem, N. P., Kamal, N. M., Pearson, S., Shatte, T., Jordan, D. R., Mace, E. S. and Ishii, T. (2025) Genetic diversity and structure of Asian cowpea germplasm. Scientific Reports, 15 (1). https://doi.org/10.1038/s41598-025-13511-4

Park, R. F., Kosman, E., Roake, J., Ding, Y., Winter, B., Zwer, P. K. and Singh, D. (2025) Long-Term Studies of Puccinia coronata f. sp. avenae in Australia Reveal High Pathogenic Diversity, Regional Virulence Differences, Evidence of Clonality and Rapid Emergence of Virulence Matching Deployed Host Resistance. Plant Pathology, 74 (6). pp. 1778-1795. https://doi.org/10.1111/ppa.14125

Pennerman, K. K., Goldman, P., Dilla-Ermita, C. J., Ramos, G., Jaime, J. H., Lopez-Hernandez, J., Ramos, J., Aviles, M., Borrero, C., Gomez, A. O., Neal, J. M., Chilvers, M., Ortiz, V., Stukenbrock, E. H., Goldman, G. H., Mengistu, A., Lopez-Nicora, H. D., Sacher, G. O., Vaghefi, N., Kiss, L., Benz, J. P., Machado, A. R., Seijo, T. E., Peres, N. A., Martin, F. N., Broome, J. C., Ivors, K., Cole, G. S., Knapp, S. J., McFarlane, D. J., Mattner, S. W., Gambardella, M., Gluck-Thaler, E. and Henry, P. M. (2025) Population Genomics of Macrophomina spp. Reveals Cryptic Host Specialization and Evidence for Meiotic Recombination. Molecular Plant-Microbe Interactions® . https://doi.org/10.1094/MPMI-03-25-0032-R

Popa-Baez, A. D., Smith, L. J., Stiller, W. N., Soliveres, M., Pandey, G., Saski, C. A., Jones, D. C. and Wilson, I. W. (2025) Comparative Genomics Reveals Ancient and Unique Pathogenicity Features in Australian Fusarium oxysporum f. sp. vasinfectum. Journal of Fungi, 11 (7). p. 481. https://doi.org/10.3390/jof11070481

Prasad, S. H., Bignell, G. W., Copeland, R. G.R., Garg, V., Chitikineni, A., Henry, R. J., Dillon, N. L., Mir, R. R. and Varshney, R. K. (2025) Integrating multiomics and modern breeding tools for accelerating genetic improvement in Annonas. Functional & Integrative Genomics, 25 (1). https://doi.org/10.1007/s10142-025-01653-7

Risteski, J., Kiss, L., Idnurm, A., Shivas, R. G., Tan, Y. P., Sun, J. and Vaghefi, N. (2025) First molecular phylogeny of mycoparasitic species of Sphaerellopsis isolated from rust fungi in Australia. Mycological Progress, 24 , 57. https://doi.org/10.1007/s11557-025-02075-2

Roy, D., Dinglasan, E., Fowler, R. A., Platz, G. J., Lance, R. C.M., Synman, L., Franckowiak, J., Hickey, L. T., Voss-Fels, K. and Robinson, H. (2025) Genomic regions associated with spot blotch resistance in elite barley breeding populations. Molecular Breeding, 45 (2). p. 16. https://doi.org/10.1007/s11032-025-01537-5

Rubino, L., Abrahamian, P., An, W., Aranda, M. A., Ascencio-Ibañez, J. T., Bejerman, N., Blouin, A. G., Candresse, T., Canto, T., Cao, M., Carr, J. P., Cho, W. K., Constable, F., Dasgupta, I., Debat, H., Dietzgen, R. G., Digiaro, M., Donaire, L., Elbeaino, T., Fargette, D., Filardo, F. F., Fischer, M. G., Fontdevila, N., Fox, A., Freitas-Astua, J., Fuchs, M., Geering, A. D.W., Ghafari, M., Hafrén, A., Hammond, J., Hammond, R., Hasiów-Jaroszewska, B., Hebrard, E., Hernández, C., Hily, J.-M., Hosseini, A., Hull, R., Inoue-Nagata, A. K., Jordan, R., Kondo, H., Kreuze, J. F., Krupovic, M., Kubota, K., Kuhn, J. H., Leisner, S., Lett, J.-M., Li, C., Li, F., Li, J. M., López-Lambertini, P. M., Lopez-Moya, J. J., Maclot, F., Mäkinen, K., Martin, D., Massart, S., Miller, W. A., Mohammadi, M., Mollov, D., Muller, E., Nagata, T., Navas-Castillo, J., Neriya, Y., Ochoa-Corona, F. M., Ohshima, K., Pallás, V., Pappu, H., Petrzik, K., Pooggin, M., Prigigallo, M. I., Ramos-González, P. L., Ribeiro, S., Richert-Pöggeler, K. R., Roumagnac, P., Roy, A., Sabanadzovic, S., Safářová, D., Saldarelli, P., Sanfaçon, H., Sarmiento, C., Sasaya, T., Scheets, K., Schravesande, W. E.W., Seal, S., Shimomoto, Y., Sõmera, M., Stavolone, L., Stewart, L. R., Teycheney, P.-Y., Thomas, J. E., Thompson, J. R., Tiberini, A., Tomitaka, Y., Tzanetakis, I., Umber, M., Urbino, C., van den Burg, H. A., Van der Vlugt, R. A.A., Varsani, A., Verhage, A., Villamor, D., von Bargen, S., Walker, P. J., Wetzel, T., Whitfield, A. E., Wylie, S. J., Yang, C., Zerbini, F. M. and Zhang, S. (2025) Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses from the Plant Viruses Subcommittee, 2025. Journal of General Virology, 106 (7). https://doi.org/10.1099/jgv.0.002114

Smith, M. W., Gultzow, D. L., Newman, T. K., Reid, M., Krueger, R. R., Roose, M. L., Federici, C. T. and Bowman, K. D. (2025) ‘US-Gallasch’: A New Citrus Rootstock 60 Years in the Making. HortScience, 60 (5). pp. 777-781. https://doi.org/10.21273/HORTSCI18444-24

Souza-Gonçalves, I., Lopes-Andrade, C., Sandoval-Gomez, V. E. and Grossi, P. C. (2025) Redescription of Cis olivieri Mellié, 1849 (Coleoptera: Ciidae), with a new synonym and the first records from Brazil. Papéis Avulsos de Zoologia, 65 . e202565004. https://doi.org/10.11606/1807-0205/2025.65.004

Sparks, A. H., Adorada, D. L., Colombi, E., Kelly, L. A., Young, A., Knight, N. L. and Vaghefi, N. (2025) Clonal Expansion from Standing Genetic Variation Underpins the Evolution of Curtobacterium flaccumfaciens pv. flaccumfaciens in Australia. Phytopathology® (ja). null. https://doi.org/10.1094/PHYTO-01-25-0032-R

Takagi, T., Hong, H. T., Dillon, N. L., Wilkinson, M. J. and O'Hare, T. J. (2025) Identifying key genes controlling flesh colour in mangoes using genome-wide association studies (GWAS). Acta Horticulturae, 1415 . pp. 237-340. https://doi.org/10.17660/ActaHortic.2025.1415.28

Thomas, J. E., Jackson, M., Campbell, P. R., Tran, N. T. and Geering, A. D. W. (2025) The complete genome sequence of a novel legume closterovirus from Norfolk Island. Australasian Plant Pathology, 54 . pp. 131-135. https://doi.org/10.1007/s13313-025-01023-8

Timilsina, S., Iruegas-Bocardo, F., Jibrin, M. O., Sharma, A., Subedi, A., Kaur, A., Roach, R. L. and et, a. (2025) Diversification of an emerging bacterial plant pathogen; insights into the global spread of Xanthomonas euvesicatoria pv. perforans. PLOS Pathogens, 21 (4). e1013036. https://doi.org/10.1371/journal.ppat.1013036

Van Haeften, S., Smith, D., Robinson, H., Dudley, C., Kang, Y., Douglas, C. A., Hickey, L. T., Potgieter, A., Chapman, S. and Smith, M. R. (2025) Unmanned aerial vehicle phenotyping of agronomic and physiological traits in mungbean. The Plant Phenome Journal, 8 (1). e70016. https://doi.org/10.1002/ppj2.70016

2024

Anwar, M. R., Emebiri, L., Ip, R. H. L., Luckett, D. J., Chauhan, Y. S. and Zeleke, K. T. (2024) Least absolute shrinkage and selection operator regression used to select important features when predicting wheat yield from various genotype groups. The Journal of Agricultural Science, 162 (3). pp. 245-259. https://doi.org/10.1017/S0021859624000479

Bottomley, P., Sutherland, M. W., Wilson, B. A. L., Rognoni, B., Kelly, A. M. and Percy, C. D. (2024) Soil solarisation delivers near zero levels of Fusarium pseudograminearum in cereal crown rot reference sites. Crop Protection, 185 . p. 106887. https://doi.org/10.1016/j.cropro.2024.106887

Congdon, B. S., Sharman, M. and Kehoe, M. A. (2024) Genetic diversity of soybean dwarf virus in two regions of mainland Australia. Archives of Virology, 169 (11). p. 216. https://doi.org/10.1007/s00705-024-06142-z

Crous, P.W., Wingfield, M.J., Jurjevic, Z., Balashov, S., Osieck, E.R., Marin-Felix, Y., Shivas, R. G. and Tan, Y. P. (2024) Fungal Planet description sheets: 1697-1780. Fungal Systematics and Evolution, 14 (1). pp. 325-577. https://doi.org/10.3114/fuse.2024.14.19

Crous, P. W., Shivas, R. G., Tan, Y. P., Wingfield, M. J. and et, a. (2024) Fungal Planet description sheets: 1614-1696. Fungal Systematics and Evolution, 13 (1). pp. 183-440. https://doi.org/10.3114/fuse.2024.13.11

Dillon, N. L., Zhang, D., Nauheimer, L., Toramo, E., Nagalevu, P., Melteras, M.-V., Wallez, S., Finau, K., Nakidakida, S., Lepou, P. and Diczbalis, Y. (2024) Understanding the cocoa genetic resources in the Pacific to assist producers to supply the growing craft market. New Zealand Journal of Crop and Horticultural Science, 52 (4). pp. 306-320. https://doi.org/10.1080/01140671.2023.2278788

Filardo, F. F., Nurulita, S., Jones, L., Gambley, C., Bond, S., Sharman, M. and Campbell, P. R. (2024) Genomic variation in pepper vein yellows viruses in Australia, including a new putative variant, PeVYV-10. Archives of Virology, 169 (1). p. 18. https://doi.org/10.1007/s00705-023-05943-y

Guo, J., Zhao, C., Gupta, S., Platz, G., Snyman, L. and Zhou, M. (2024) Genome-wide association mapping for seedling and adult resistance to powdery mildew in barley. Theoretical and Applied Genetics, 137 (3). p. 50. https://doi.org/10.1007/s00122-024-04550-y

Kang, Y., Rambla, C., Haeften, S. V., Fu, B., Akinlade, O., Potgieter, A. B., Borrell, A. K., Mace, E. S., Jordan, D. R., Alahmad, S. and Hickey, L. T. (2024) Seminal root angle is associated with root system architecture in durum wheat. Food and Energy Security, 13 (4). e570. https://doi.org/10.1002/fes3.570

Keno, T., Mace, E. S., Godwin, I., Jordan, D. and Kelly, A. (2024) The use of fixed shelling percentage biases genotype selection in hybrid maize multi-environment yield trials. Field Crops Research, 315 . p. 109437. https://doi.org/10.1016/j.fcr.2024.109437

Kyu, K., Taylor, C. M., Douglas, C. A., Malik, A. I., Colmer, T. D., Siddique, K. H. and Erskine, W. (2024) Genetic Diversity and Candidate Genes for Transient Waterlogging Tolerance in Mungbean at the Germination and Seedling Stages. Frontiers in Plant Science, 15 . p. 1297096. https://doi.org/10.3389/fpls.2024.1297096

Li, J.-b., Ryan, M., Dong, C.-m., Forrest, K. L., Hayden, M. J., Singh, S., Wang, Y.-q., Ahmed, N., McIntosh, R. A. and Zhang, P. (2024) Pseudo-linkage or real-linkage of rust resistance genes in a wheat-Thinopyrum intermedium translocation line. TAG Theoretical and Applied Genetics, 138 (1). https://doi.org/10.1007/s00122-024-04807-6

Mahendraraj, S., Collins, M., Chauhan, Y. S., Mellor, V. and Rachaputi, R. C. N. (2024) Dynamics of productivity in pigeonpea [Cajanus cajan (L.) Millsp.] in subtropical Australia. Agronomy Journal, 116 (6). pp. 2827-2840. https://doi.org/10.1002/agj2.21667

Mahendraraj, S., Collins, M., Chauhan, Y. S., Mellor, V. and Rachaputi, R. C.N. (2024) Reliability of Nonlinear least square broken stick model in quantifying the effects of temperature and photoperiod on flowering of pigeonpea genotypes (Cajanus cajan (L.) Millsp.). Journal of Applied and Natural Science, 16 (2). pp. 508-518.

McTaggart, A. R., Scarlettt, K., Slot, J.C., Barlow, C., Appleyard, C., Gardiner, D.M. and Shuey, L. S. (2024) Wood-loving magic mushrooms from Australia are saprotrophic invaders in the Northern Hemisphere. Fungal Systematics and Evolution, 14 (1). pp. 209-222. https://doi.org/10.3114/fuse.2024.14.14

Nakandala, U., Furtado, A., Masouleh, A. K., Smith, M. W., Mason, P., Williams, D. C. and Henry, R. J. (2024) The genomes of Australian wild limes. Plant Molecular Biology, 114 (5). p. 102. https://doi.org/10.1007/s11103-024-01502-4

Okemo, P., Wijesundra, U., Nakandala, U., Dillon, N. L., Chandora, R., Campbell, B., Smith, M., Hardner, C., Cadorna, C. A., Martin, G., Yahiaoui, N., Garsmeur, O., Pompidor, N., D’Hont, A. and Henry, R. J. (2024) Crop Domestication in the Asia Pacific Region: A review. Agriculture Communications . p. 100032. https://doi.org/10.1016/j.agrcom.2024.100032

Ollitrault, P., Hufnagel, B., Curk, F., Perdereau, A., Mournet, P., Miranda, M., Costantino, G., Froelicher, Y., Alves, M., Forner Giner, M. A., Smith, M. W., Aleza, P., Luro, F., Wulff, N. A., Peña, L., Morillon, R. and Lemainque, A. (2024) Comparative genetic mapping and a consensus interspecific genetic map reveal strong synteny and collinearity within the Citrus genus. Frontiers in Plant Science, 15 . https://doi.org/10.3389/fpls.2024.1475965

Otwani, D., Hunt, C. H., Cruickshank, A. W., Powell, O., Koltunow, A., Mace, E. S. and Jordan, D. (2024) Adaptation and plasticity of yield in hybrid and inbred sorghum. Crop Science, 64 (2). pp. 560-570. https://doi.org/10.1002/csc2.21160

Rodrigues Jardim, B., Gambley, C., Tran-Nguyen, L. T. T., Webster, C., Kehoe, M., Kinoti, W. M., Bond, S., Davis, R., Jones, L., Pathania, N., Sharman, M., Chapman, T., Rodoni, B. C. and Constable, F. E. (2024) A metagenomic investigation of phytoplasma diversity in Australian vegetable growing regions. Microbial Genomics, 10 (3). https://doi.org/10.1099/mgen.0.001213

Rognoni, B. G., Forknall, C. R., Simpfendorfer, S., Daniel, R., Neale, L. and Kelly, A. M. (2024) Quantifying the resistance of Australian wheat genotypes to Pratylenchus thornei based on a continuous metric from a factor analytic linear mixed model. Euphytica, 220 (9). p. 141. https://doi.org/10.1007/s10681-024-03387-2

Shi, Y., Ozaki, T., Sugawara, A., Morishita, Y., Tan, Y. P., Shivas, R. G., Davis, R. A. and Asai, T. (2024) A new 3,6-dialkyl-α-pyrone produced by the heterologous expression of a PKS-NRPS hybrid enzyme derived from a Pestalotiopsis endophyte. Tetrahedron Letters, 134 . p. 154865. https://doi.org/10.1016/j.tetlet.2023.154865

Smith, M. W., Gultzow, D. L., Reid, M., Newman, T. K., Thangavel, T., Webb, M., Anderson, J.M. and Miles, A. K. (2024) Breeding for citrus black spot resistance. Acta Horticulturae, 1399 . pp. 67-72. https://doi.org/10.17660/ActaHortic.2024.1399.8

Smith, M. W. (2024) Breeding new rootstocks for the Australian citrus industry. Project Report. Hort Innovation.

Smith, M. W., Gultzow, D. L., Reid, M., Huie, J. E. and Newman, T. K. (2024) "Extreme hybrids" from the Australian citrus rootstock breeding program. Italus Hortus, 31 (1). pp. 43-55. https://doi.org/10.26353/j.itahort/2024.1.4355

Tran, N. T., Campbell, P. R., Crew, K. S. and Geering, A. D. W. (2024) Molecular characterisation of a novel sadwavirus infecting cattleya orchids in Australia. Archives of Virology, 169 (3). p. 68. https://doi.org/10.1007/s00705-024-05980-1

Wijesundara, U. K., Furtado, A., Dillon, N. L., Masouleh, A. K. and Henry, R. J. (2024) Phylogenetic relationships in the genus Mangifera based on whole chloroplast genome and nuclear genome sequences. Tropical Plants, 3 (1), e034. pp. 1-16. https://doi.org/10.48130/tp-0024-0031

Wijesundara, U. K., Masouleh, A. K., Furtado, A., Dillon, N. L. and Henry, R. J. (2024) A chromosome-level genome of mango exclusively from long-read sequence data. The Plant Genome, 17 (2). e20441. https://doi.org/10.1002/tpg2.20441

Wilkinson, M. J., McLay, K., Kainer, D., Elphinstone, C., Dillon, N. L., Webb, M., Wijesundara, U. K., Ali, A., Bally, I. S.E., Munyengwa, N., Furtado, A., Henry, R. J., Hardner, C. M. and Ortiz-Barrientos, D. (2024) Centromeres are hotspots for chromosomal inversions and breeding traits in mango. New Phytologist, 246 (2). pp. 899-913. https://doi.org/10.1111/nph.20252

2023

Ahsan, M. U., Barbier, F., Hayward, A., Powell, R., Hofman, H., Parfitt, S. C., Wilkie, J., Beveridge, C. A. and Mitter, N. (2023) Molecular Cues for Phenological Events in the Flowering Cycle in Avocado. Plants, 12 (12). p. 2304. https://doi.org/10.3390/plants12122304

Celestina, C., Hunt, J., Kuchel, H., Harris, F., Porker, K., Biddulph, B., Bloomfield, M., McCallum, M., Graham, R., Matthews, P., Aisthorpe, D., Al-Yaseri, G., Hyles, J., Trevaskis, B., Wang, E., Zhao, Z., Zheng, B., Huth, N. and Brown, H. (2023) A cultivar phenology classification scheme for wheat and barley. European Journal of Agronomy, 143 . p. 126732. https://doi.org/10.1016/j.eja.2022.126732

Chen, A., Sun, J., Martin, G., Gray, L.-A., Hřibová, E., Christelová, P., Yahiaoui, N., Rounsley, S., Lyons, R., Batley, J., Chen, N., Hamill, S. D., Rai, S. K., Coin, L., Uwimana, B., D’Hont, A., Doležel, J., Edwards, D., Swennen, R. and Aitken, E. A. B. (2023) Identification of a Major QTL-Controlling Resistance to the Subtropical Race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis. Pathogens, 12 (2). p. 289. https://doi.org/10.3390/pathogens12020289

Daniells, J. W. (2023) New varieties for Australian banana growers. In: Australian Banana Industry Congress 2023, 17-19th May 2023, Cairns, Australia.

Daniells, J. W. (2023) TR4 resistant bananas on the horizon – near and far. In: Australian Banana Industry Congress, 17-19th May 2023, Cairns, Australia.

Degnan, R. M., McTaggart, A. R., Shuey, L. S., Pame, L. J. S., Smith, G. R., Gardiner, D. M., Nock, V., Soffe, R., Sale, S., Garrill, A., Carroll, B. J., Mitter, N. and Sawyer, A. (2023) Exogenous double-stranded RNA inhibits the infection physiology of rust fungi to reduce symptoms in planta. Molecular Plant Pathology, 24 (3). pp. 191-207. https://doi.org/10.1111/mpp.13286

Farrell, D. (2023) Insect sanctuaries for Beneficial Predators and Parasites in Bananas. In: Australian Banana Industry Congress 2023, 17-19th May 2023, Cairns, Australia.

GRDC (2023) Soybean Production Manual: A complete guide to growing soybean in Australia. [online]. Documentation. Grains Research & Development Corporation.

Grice, K. R.E., Bally, I. S.E., Wright, C. L., Maddox, C., Ali, A. and Dillon, N. L. (2023) Mango germplasm screening for the identification of sources of tolerance to anthracnose. Australasian Plant Pathology, 52 (1). pp. 27-41. https://doi.org/10.1007/s13313-022-00899-0

Hofman, H. (2023) Reducing granulation in the production of Imperial mandarins. Project Report. Hort Innovation.

Huang, Y., He, J., Xu, Y., Zheng, W., Wang, S., Chen, P., Zeng, B., Yang, S., Jiang, X., Liu, Z., Wang, L., Wang, X., Liu, S., Lu, Z., Liu, Z., Yu, H., Yue, J., Gao, J., Zhou, X., Long, C., Zeng, X., Guo, Y.-J., Zhang, W.-F., Xie, Z., Li, C., Ma, Z., Jiao, W., Zhang, F., Larkin, R. M., Krueger, R. R., Smith, M. W., Ming, R., Deng, X. and Xu, Q. (2023) Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. Nature Genetics, 55 . pp. 1964-1975. https://doi.org/10.1038/s41588-023-01516-6

Kant, P., Brohier, N., Mann, R., Rigano, L., Taylor, R., Wong-Bajracharya, J., Chapman, T. A., Kehoe, M., Roach, R. L., Rodoni, B. and Constable, F. (2023) High-quality full genome assembly of historic Xylella fastidiosa strains from ICMP collection using a hybrid sequencing approach. Microbiology Resource Announcements, 12 (11), e0053623. https://doi.org/10.1128/MRA.00536-23

Lin, Y.-P., Chen, H.-W., Yeh, P.-M., Anand, S. S., Lin, J., Li, J., Noble, T. J., Nair, R., Schafleitner, R., Samsonova, M., Bishop-von-Wettberg, E., Nuzhdin, S., Ting, C.-T., Lawn, R. J. and Lee, C.-R. (2023) Demographic history and distinct selection signatures of two domestication genes in mungbean. Plant Physiology, 193 (2). pp. 1197-1212. https://doi.org/10.1093/plphys/kiad356

Lindsay, S. J. (2023) Pre-commercialisation Trials For New Banana Varieties – A Crucial Step in the Variety Development Pipeline. In: Australian Banana Industry Congress 2023, 17-19th May 2023, Cairns, Australia.

Maheen, N., Shafiq, M., Sadiq, S., Farooq, M., Ali, Q., Habib, U., Shahid, M. A., Ali, A. and Ali, F. (2023) Genome Identification and Characterization of WRKY Transcription Factor Gene Family in Mandarin (Citrus reticulata). Agriculture, 13 (6). p. 1182. https://doi.org/10.3390/agriculture13061182

McTaggart, A. R., James, T. Y., Slot, J. C., Barlow, C., Fechner, N., Shuey, L. S. and Drenth, A. (2023) Genome sequencing progenies of magic mushrooms (Psilocybe subaeruginosa) identifies tetrapolar mating and gene duplications in the psilocybin pathway. Fungal Genetics and Biology, 165 . p. 103769. https://doi.org/10.1016/j.fgb.2022.103769

Menamo, T., Borrell, A. K., Mace, E. S., Jordan, D. R., Tao, Y., Hunt, C. H. and Kassahun, B. (2023) Genetic dissection of root architecture in Ethiopian sorghum landraces. Theoretical and Applied Genetics, 136 (10). p. 209. https://doi.org/10.1007/s00122-023-04457-0

Munyengwa, N., Peace, C., Dillon, N. L., Ortiz-Barrientos, D., Christie, N., Myburg, A. A. and Hardner, C. (2023) SNP and haplotype-based genomic prediction of fruit quality traits in sweet cherry (Prunus avium). Acta Horticulturae, 1362 . pp. 173-180. https://doi.org/10.17660/ActaHortic.2023.1362.23

Nakandala, U., Masouleh, A. K., Smith, M. W., Furtado, A., Mason, P., Constantin, L. and Henry, R. J. (2023) Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes. Horticulture Research, 10 (5), uhad058. https://doi.org/10.1093/hr/uhad058

Nunn, J., Hardner, C., De Faveri, J., Akinsanmi, O. A., O'Connor, K. M., Alam, M. and Topp, B. (2023) Genetic parameters of husk spot resistance in macadamia breeding families. Euphytica, 219 (5). p. 54. https://doi.org/10.1007/s10681-023-03169-2

Potgieter, A., Camino, C., Poblete, T., George-Jaeggli, B. and et, a. (2023) Advances in the Study of Biochemical, Morphological and Physiological Traits of Wheat and Sorghum Crops in Australia Using Hyperspectral Data and Machine Learning. In: IGARSS 2023 - 2023 IEEE International Geoscience and Remote Sensing Symposium, 16-21 July 2023, Pasadena, Calif. USA. https://doi.org/10.1109/IGARSS52108.2023.10282230

Sari, R., Crayn, D., Dillon, N. L., Gadek, P. and Abell, S. (2023) Molecular and morphological analysis supports the transfer of the monotypic Indonesian genus Septogarcinia Kosterm. to Garcinia (Clusiaceae). Reinwardtia, 22 (2). pp. 111-129. https://doi.org/10.55981/reinwardtia.2023.4581

Tirfessa, A., McLean, G., Baker, P., Mortlock, M., Hammer, G. and van Oosterom, E. (2023) Differences in temperature responses among phenological processes in diverse Ethiopian sorghum germplasm can affect their specific adaptation to environmental conditions. Annals of Botany, 131 . pp. 601-611. https://doi.org/10.1093/aob/mcad011

Ullah, N., Christopher, J., Frederiks, T. M., Ma, S., Tan, D. K. Y. and Chenu, K. (2023) A robust field-based method to screen heat tolerance in wheat. European Journal of Agronomy, 144 . p. 126757. https://doi.org/10.1016/j.eja.2023.126757

Van Haeften, S., Dudley, C., Kang, Y., Smith, D., Nair, R. M., Douglas, C. A., Potgieter, A., Robinson, H., Hickey, L. T. and Smith, M. R. (2023) Building a better Mungbean: Breeding for reproductive resilience in a changing climate. Food and Energy Security, 12 (6). e467. https://doi.org/10.1002/fes3.467

Volp, T. M., Zalucki, M. P. and Furlong, M. J. (2023) Helicoverpa armigera preference and performance on three cultivars of short-duration pigeonpea (Cajanus cajan): the importance of whole plant assays. Pest Management Science, 79 (2). pp. 627-637. https://doi.org/10.1002/ps.7230

Wijesundara, W. W. M. U. K., Furtado, A., Dillon, N. L., Masouleh, A. K. and Henry, R. (2023) Determination of phylogenetic relationships in the genus Mangifera based on whole chloroplast genome and nuclear genome sequences. bioRxiv . 2023.09.24.559211. https://doi.org/10.1101/2023.09.24.559211

Yadav, C. B., Rozen, A., Eshed, R., Ish-Shalom, M., Feinganbaum, A., Dillon, N. L., Bally, I. S.E., Webb, M., Kuhn, D., Ophir, R., Cohen, Y. and Sherman, A. (2023) Promotor insertion leads to polyembryony in mango – a case of convergent evolution with citrus. Horticulture Research, 10 (12), uhad227. https://doi.org/10.1093/hr/uhad227

Zhang, S., Wang, J., He, W., Kan, S., Liao, X., Jordan, D. R., Mace, E. S., Tao, Y., Cruickshank, A. W., Klein, R., Yuan, D., Tembrock, L. R. and Wu, Z. (2023) Variation in mitogenome structural conformation in wild and cultivated lineages of sorghum corresponds with domestication history and plastome evolution. BMC Plant Biology, 23 (1). p. 91. https://doi.org/10.1186/s12870-023-04104-2

2022

Birt, H. W. G., Pattison, A. B., Skarshewski, A., Daniells, J. W., Raghavendra, A. and Dennis, P. G. (2022) The core bacterial microbiome of banana (Musa spp.). Environmental Microbiome, 17 (1). p. 46. https://doi.org/10.1186/s40793-022-00442-0

Borrell, A. K., Wong, A. C. S., George-Jaeggli, B., van Oosterom, E. J., Mace, E. S., Godwin, I. D., Liu, G., Mullet, J. E., Klein, P. E., Hammer, G. L., McLean, G., Hunt, C. H. and Jordan, D. R. (2022) Genetic modification of PIN genes induces causal mechanisms of stay-green drought adaptation phenotype. Journal of Experimental Botany, 73 (19). pp. 6711-6726. https://doi.org/10.1093/jxb/erac336

Chauhan, Y. S., Krosch, S., Bell, K. L., Wright, G. C. and Rachaputi, R. C. N. (2022) Agronomic responses of newly bred short season peanut cultivars in a variable subtropical environment. In: Proceedings of the 20th Agronomy Australia Conference, 2022, 6 - 10 February 2022, Toowoomba Qld.

Christopher, M. J., Bell, K. L., Plant, E. and Seymour, N. P. (2022) Are mungbean-compatible wild bradyrhizobia more resilient to abiotic stress? In: Proceedings of the 20th Agronomy Australia Conference, 2022, 6 - 10 February 2022, Toowoomba Qld.

Coast, O., Posch, B. C., Rognoni, B. G., Bramley, H., Gaju, O., Mackenzie, J., Pickles, C., Kelly, A. M., Lu, M., Ruan, Y.-L., Trethowan, R. and Atkin, O. K. (2022) Wheat photosystem II heat tolerance: evidence for genotype-by-environment interactions. The Plant Journal, 111 (5). pp. 1368-1382. https://doi.org/10.1111/tpj.15894

Crous, P. W., Boers, J., Holdom, D., Steinrucken, T. V., Tan, Y. P., Vitelli, J. S., Shivas, R. G., Barrett, M., Boxshall, A. G., Broadbridge, J., Larsson, E., Lebel, T., Pinruan, U., Sommai, S., Alvarado, P., Bonito, G., Decock, C. A., De la Peña-Lastra, S., Delgado, G., Houbraken, J., Maciá-Vicente, J. G., Raja, H. A., Rigueiro-Rodríguez, A., Rodríguez, A., Wingfield, M. J., Adams, S. J., Akulov, A., Al-Hidmi, T., Antonín, V., Arauzo, S., Arenas, F., Armada, F., Aylward, J., Bellanger, J. M., Berraf-Tebbal, A., Bidaud, A., Boccardo, F., Cabero, J., Calledda, F., Corriol, G., Crane, J. L., Dearnaley, J. D. W., Dima, B., Dovana, F., Eichmeier, A., Esteve-Raventós, F., Fine, M., Ganzert, L., García, D., Torres-Garcia, D., Gené, J., Gutiérrez, A., Iglesias, P., Istel, Ł., Jangsantear, P., Jansen, G. M., Jeppson, M., Karun, N. C., Karich, A., Khamsuntorn, P., Kokkonen, K., Kolarík, M., Kubátová, A., Labuda, R., Lagashetti, A. C., Lifshitz, N., Linde, C., Loizides, M., Luangsa-ard, J. J., Lueangjaroenkit, P., Mahadevakumar, S., Mahamedi, A. E., Malloch, D. W., Marincowitz, S., Mateos, A., Moreau, P. A., Miller, A. N., Molia, A., Morte, A., Navarro-Ródenas, A., Nebesářová, J., Nigrone, E., Nuthan, B. R., Oberlies, N. H., Pepori, A. L., Rämä, T., Rapley, D., Reschke, K., Robicheau, B. M., Roets, F., Roux, J., Saavedra, M., Sakolrak, B., Santini, A., Sevčíková, H., Singh, P. N., Singh, S. K., Somrithipol, S., Spetik, M., Sridhar, K. R., Starink-Willemse, M., Taylor, V. A., van Iperen, A. L., Vauras, J., Walker, A. K., Wingfield, B. D., Yarden, O., Cooke, A.W., Manners, A. G., Pegg, K. G. and Groenewald, J. Z. (2022) Fungal Planet description sheets: 1383-435. Persoonia - Molecular Phylogeny and Evolution of Fungi, 48 (1). pp. 261-371. https://doi.org/10.3767/persoonia.2022.48.08

Degnan, R. M., McTaggart, A. R., Shuey, L. S., Pame, L. J. S. and et, a. (2022) Exogenous RNAi to control rust fungi. In: TropAg 2022 International Agriculture Conference, 31 October - 2 November 2022, Brisbane, Australia.

Djitro, N., Roach, R. L., Mann, R., Campbell, P. R., Rodoni, B. and Gambley, C. (2022) Comparative genomics and genomic diversity of Pseudomonas syringae clade 2b-a in Australia. BMC Microbiology, 22 (1). p. 278. https://doi.org/10.1186/s12866-022-02678-9

Dodd, S., Shah, F., Kimberley, M., Somchit, C. and Hood, I. (2022) Differentiating individuals of Armillaria species in New Zealand forests. New Zealand Journal of Forestry Science, 52 . https://doi.org/10.33494/nzjfs522022x203x

Dreccer, M. F., Macdonald, B., Farnsworth, C. A., Paccapelo, V., Awasi, M. A., Condon, A. G., Forrest, K., Lee Long, I. and McIntyre, C. L. (2022) Multi-donor × elite-based populations reveal QTL for low-lodging wheat. Theoretical and Applied Genetics, 135 (5). pp. 1685-1703. https://doi.org/10.1007/s00122-022-04063-6

Gaffney, J., Girma, D., Kane, N. A., Llaca, V., Mace, E. S., Taylor, N. and Tibebu, R. (2022) Maximizing value of genetic sequence data requires an enabling environment and urgency. Global Food Security, 33 . p. 100619. https://doi.org/10.1016/j.gfs.2022.100619

Hamill, S. D. (2022) Plant tissue culture: An under-estimated tool in plant production systems. In: TropAg 2022 International Agriculture Conference, 31 October - 2 November 2022, Brisbane, Australia.

Jambuthenne, D. T., Riaz, A., Athiyannan, N., Alahmad, S., Ng, W. L., Ziems, L., Afanasenko, O., Periyannan, S. K., Aitken, E., Platz, G. J., Godwin, I., Voss-Fels, K. P., Dinglasan, E. and Hickey, L. T. (2022) Mining the Vavilov wheat diversity panel for new sources of adult plant resistance to stripe rust. Theoretical and Applied Genetics, 135 (4). pp. 1355-1373. https://doi.org/10.1007/s00122-022-04037-8

Li, B., Liu, T., Ali, A., Xiao, Y., Shan, N., Sun, J., Huang, Y., Zhou, Q. and Zhu, Q. (2022) Complete chloroplast genome sequences of three aroideae species (Araceae): lights into selective pressure, marker development and phylogenetic relationships. BMC Genomics, 23 (1). p. 218. https://doi.org/10.1186/s12864-022-08400-3

Li, Y., Lake, L., Chauhan, Y. S., Taylor, J. and Sadras, V. (2022) Genetic basis and adaptive implications of temperature-dependent and temperature-independent effects of drought on chickpea phenology. Journal of Experimental Botany, 73 (14), erac195. pp. 4981-4995. https://doi.org/10.1093/jxb/erac195

Li, Y., Ruperao, P., Batley, J., Edwards, D., Martin, W., Hobson, K. and Sutton, T. (2022) Genomic prediction of preliminary yield trials in chickpea: Effect of functional annotation of SNPs and environment. The Plant Genome, 15 (1). e20166. https://doi.org/10.1002/tpg2.20166

Mackie, J., Kinoti, W. M., Chahal, S. I., Lovelock, D. A., Campbell, P. R., Tran-Nguyen, L. T. T., Rodoni, B. C. and Constable, F. E. (2022) Targeted Whole Genome Sequencing (TWG-Seq) of Cucumber Green Mottle Mosaic Virus Using Tiled Amplicon Multiplex PCR and Nanopore Sequencing. Plants, 11 (20). p. 2716. https://doi.org/10.3390/plants11202716

McTaggart, A. R., James, T. Y., Idnurm, A., Park, R. F., Shuey, L. S., Demers, M. N. K. and Aime, M. C. (2022) Sexual reproduction is the null hypothesis for life cycles of rust fungi. PLOS Pathogens, 18 (5). e1010439. https://doi.org/10.1371/journal.ppat.1010439

Menzel, C. M. (2022) A review of powdery mildew in strawberries: the resistance of species, hybrids and cultivars to the pathogen is highly variable within and across studies with no standard method for assessing the disease. The Journal of Horticultural Science and Biotechnology, 97 (3). pp. 273-297. https://doi.org/10.1080/14620316.2021.1985402

Menzel, C. M. (2022) A review of productivity in strawberry: do the plants need larger canopies, more flowers, or higher CO2 assimilation for higher yields? The Journal of Horticultural Science and Biotechnology, 97 (6). pp. 674-696. https://doi.org/10.1080/14620316.2022.2077240

Mizani, A., Bally, I. S.E., Ibell, P., Wright, C. L. and Maddox, C. (2022) The effect of rootstocks on mango tree vigour, scion architecture, yield, percentage of flowering terminals in young unpruned trees. Acta Horticulturae, 1346 . pp. 183-190. https://doi.org/10.17660/ActaHortic.2022.1346.24

Mostert, D., Wicker, E., de Jager, M. M., Al Kaabi, S. M., O’Neill, W. T., Perry, S., Li, C., Ganyun, Y., Pegg, K. G., Mostert, L. and Viljoen, A. (2022) A Polyphasic Approach Reveals Novel Genotypes and Updates the Genetic Structure of the Banana Fusarium Wilt Pathogen. Microorganisms, 10 (2). p. 269. https://doi.org/10.3390/microorganisms10020269

Mound, L. A., Tree, D. J. and Wells, A. (2022) Convoluted maxillary stylets among Australian Thysanoptera Phlaeothripinae associated mainly with Casuarinaceae trees. Zootaxa, 5190 (3). pp. 301-332. https://doi.org/10.11646/zootaxa.5190.3.1

Mumford, M. H., Forknall, C. R., Rodriguez, D., Eyre, J., Serafin, L., Aisthorpe, D., Bell, K. L. and Kelly, A. M. (2022) Predictive models incorporating environmental covariates for genotype × environment × management (G×E×M) interactions applied to sorghum agronomy trials. In: Proceedings of the 20th Agronomy Australia Conference, 2022, 6 - 10 February 2022, Toowoomba Qld.

Nair, R. M., Alam, A., Pratap, A., Soehendi, R., Karimi, R., Win, M. M., Ryan, M. and et, a. (2022) Genomics and phenomics assisted Mungbean breeding. In: TropAg 2022 International Agriculture Conference, 31 October - 2 November 2022, Brisbane, Australia.

Nunn, J., De Faveri, J., O'Connor, K. M., Alam, M., Hardner, C., Akinsanmi, O. and Topp, B. (2022) Genome-Wide Association Study for Abscission Failure of Fruit Pericarps (Stick-Tights) in Wild Macadamia Germplasm. Agronomy, 12 (8). p. 1913. https://doi.org/10.3390/agronomy12081913

O'Connor, K. M., Neal, J. M., Gomez, A. and De Faveri, J. (2022) Using DNA Information to Breed for Disease-resistant Strawberries. Proceedings of The Royal Society of Queensland, 131 . https://doi.org/10.53060/prsq.2022-16

Oag, D. R. (2022) Improved management of charcoal rot of strawberry. Project Report. Hort Innovation.

Paccapelo, V., Kelly, A. M., Christopher, J. T. and Verbyla, A. P. (2022) WGNAM: whole-genome nested association mapping. Theoretical and Applied Genetics, 135 . pp. 2213-2232. https://doi.org/10.1007/s00122-022-04107-x

Pattison, A. B., Cobon, J. A. and Araya-Vargas, M. (2022) Towards sustainable management of nematodes in banana. In: Achieving sustainable cultivation of bananas: Volume 3 Diseases and pests. Burleigh Dodds Science Publishing, United Kingdom.

Petronaitis, T., Forknall, C. R., Simpfendorfer, S., Flavel, R. and Backhouse, D. (2022) Is there a disease downside to stripper fronts? Harvest height implications for Fusarium crown rot management. GRDC Update .

Rodriguez, D., Eyre, J., Serafin, L., Hellyer, M., Aisthorpe, D., Auer, J., Mumford, M. H. and Broad, I. J. (2022) Transformation agronomy by growing summer crops in winter: Winter sown sorghum. In: Proceedings of the 20th Agronomy Australia Conference, 2022, 6 - 10 February 2022, Toowoomba Qld.

Ryley, M. J., Tan, Y. P., Kruse, J., Thines, M. and Shivas, R. G. (2022) More than meets the eye — unexpected diversity in downy mildews (Oomycetes) on grasses in Australia. Mycological Progress, 21 (1). pp. 297-310. https://doi.org/10.1007/s11557-021-01750-4

Sanewski, G. M. (2022) DArTseq molecular markers associated with the piping leaf margin phenotype in pineapple (Ananas comosus L.). Tropical Plant Biology, 15 . pp. 233-246. https://doi.org/10.1007/s12042-022-09317-7

Serafin, L., Hellyer, M., Rodriguez, D., Eyre, J., Aisthorpe, D. and Mumford, M. H. (2022) Transformational agronomy by growing summer crops in winter: northern NSW. In: Proceedings of the 20th Agronomy Australia Conference, 2022, 6 - 10 February 2022, Toowoomba Qld.

Serafin, L., McLeod, M., Hellyer, M., Rodriguez, D., Eyre, J., Aisthorpe, D. and Mumford, M. H. (2022) Transformational agronomy by growing summer crops in winter: water productivity of dryland sorghum on the Liverpool Plains, NSW. In: Proceedings of the 20th Agronomy Australia Conference, 2022, 6 - 10 February 2022, Toowoomba Qld.

Steinrucken, T. V., Vitelli, J. S., Holdom, D. G. and Tan, Y. P. (2022) The diversity of microfungi associated with grasses in the Sporobolus indicus complex in Queensland, Australia. Frontiers in Fungal Biology, 3 . https://doi.org/10.3389/ffunb.2022.956837

Tan, Y. P., Bishop-Hurley, S. L., Shivas, R. G., Cowan, D. A., Maggs-Kölling, G., Maharachchikumbura, S., Pinruan, U., Bransgrove, K., De la Peña-Lastra, S., Taylor, T., Kelly, L. A. and Comben, D. F. (2022) Fungal Planet description sheets: 1436–1477. Persoonia-Molecular Phylogeny and Evolution of Fungi, 49 (1). pp. 261-350. https://doi.org/10.3767/persoonia.2022.49.08

Tran, N. T., Teo, A. C., Crew, K. S., Thomas, J. E., Campbell, P. R. and Geering, A. D. W. (2022) Bermuda grass latent virus in Australia: genome sequence, sequence variation, and new hosts. Archives of Virology, 167 (5). pp. 1317-1323. https://doi.org/10.1007/s00705-022-05434-6

Ullah, N., Christopher, J., Frederiks, T. M. and Chenu, K. (2022) A field-based technique for screening heat tolerance of wheat lines differing in maturity at matched developmental phases. In: Proceedings of the 20th Agronomy Australia Conference, 2022, 6 - 10 February 2022, Toowoomba Qld.

Vafadarshamasbi, U., Mace, E. S., Jordan, D. and Crisp, P. A. (2022) Decoding the sorghum methylome: understanding epigenetic contributions to agronomic traits. Biochemical Society Transactions, 50 (1). pp. 583-596. https://doi.org/10.1042/bst20210908

Wilkinson, M. J., Yamashita, R., James, M. E., Bally, I. S.E., Dillon, N. L., Ali, A., Hardner, C. M. and Ortiz-Barrientos, D. (2022) The influence of genetic structure on phenotypic diversity in the Australian mango (Mangifera indica) gene pool. Scientific Reports, 12 (1). https://doi.org/10.1038/s41598-022-24800-7

Zheng, Z., Powell, J., Gao, S., Percy, C., Kelly, A. M., Macdonald, B., Zhou, M., Davies, P. and Liu, C. (2022) Investigation of Two QTL Conferring Seedling Resistance to Fusarium Crown Rot in Barley on Reducing Grain Yield Loss under Field Environments. Agronomy, 12 (6). p. 1282. https://doi.org/10.3390/agronomy12061282

Zhi, X., Tao, Y., Jordan, D., Borrell, A., Hunt, C. H., Cruickshank, A. W., Potgieter, A., Wu, A., Hammer, G., George-Jaeggli, B. and Mace, E. S. (2022) Genetic control of leaf angle in sorghum and its effect on light interception. Journal of Experimental Botany, 73 (3). pp. 801-816. https://doi.org/10.1093/jxb/erab467

Zhi, X., Hammer, G., Borrell, A., Tao, Y., Wu, A., Hunt, C. H., van Oosterom, E., Massey-Reed, S. R., Cruickshank, A., Potgieter, A. B., Jordan, D., Mace, E. S. and George-Jaeggli, B. (2022) Genetic basis of sorghum leaf width and its potential as a surrogate for transpiration efficiency. Theoretical and Applied Genetics, 135 (9). pp. 3057-3071. https://doi.org/10.1007/s00122-022-04167-z

Zhou, H., Xiao, X., Asjad, A., Han, D., Zheng, W., Xiao, G., Huang, Y. and Zhou, Q. (2022) Integration of GWAS and transcriptome analyses to identify SNPs and candidate genes for aluminum tolerance in rapeseed (Brassica napus L.). BMC Plant Biology, 22 (1). p. 130. https://doi.org/10.1186/s12870-022-03508-w

2021

Ali, M., Williams, A., Widderick, M. and Adkins, S. (2021) Response of wild oats to environmental stresses. GRDC Update .

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Bally, I. S.E. and De Faveri, J. (2021) Genetic analysis of multiple fruit quality traits in mango across sites and years. Euphytica, 217 (3). p. 44. https://doi.org/10.1007/s10681-020-02750-3

Bertioli, D. J., Clevenger, J., Godoy, I. J., Stalker, H. T., Wood, S., Santos, J. F., Ballén-Taborda, C., Abernathy, B., Azevedo, V., Campbell, J., Chavarro, C., Chu, Y., Farmer, A. D., Fonceka, D., Gao, D., Grimwood, J., Halpin, N. V., Korani, W., Michelotto, M. D., Ozias-Akins, P., Vaughn, J., Youngblood, R., Moretzsohn, M. C., Wright, G. C., Jackson, S. A., Cannon, S. B., Scheffler, B. E. and Leal-Bertioli, S. C. M. (2021) Legacy genetics of Arachis cardenasii in the peanut crop shows the profound benefits of international seed exchange. Proceedings of the National Academy of Sciences, 118 (38). e2104899118. https://doi.org/10.1073/pnas.2104899118

Birt, H. W. G., Pattison, A. B. and Dennis, P. G. (2021) Sampling Microbiomes Associated with Different Plant Compartments. In: The Plant Microbiome: Methods and Protocols. Springer US, New York, NY. https://doi.org/10.1007/978-1-0716-1040-4_2

Burgess, T.I., Edwards, J., Drenth, A., Massenbauer, T., Cunnington, J. H., Mostowfizadeh-Ghalamfarsa, R., Din, Q., Liew, E.C.Y., White, D., Scott, P., Barber, P.A., O’Gara, E., Ciampini, J., McDougall, K.L. and Tan, Y. P. (2021) Current status of Phytophthora in Australia. Persoonia-Molecular Phylogeny and Evolution of Fungi, 47 (1). pp. 151-177. https://doi.org/10.3767/persoonia.2021.47.05

Chadha, A., Florentine, S. K., Dhileepan, K., Dowling, K. and Turville, C. (2021) Germination Biology of Three Populations of Navua Sedge (Cyperus aromaticus). Weed Science, 69 (1). pp. 69-81. https://doi.org/10.1017/wsc.2020.82

Christopher, M. J., Paccapelo, V., Kelly, A. M., Macdonald, B., Hickey, L., Richard, C., Verbyla, A., Chenu, K., Borrell, A., Amin, A. and Christopher, J. (2021) QTL identified for stay-green in a multi-reference nested association mapping population of wheat exhibit context dependent expression and parent-specific alleles. Field Crops Research, 270 . p. 108181. https://doi.org/10.1016/j.fcr.2021.108181

Comben, D. F., McCulloch, G. A., Dhileepan, K. and Walter, G. H. (2021) Genetic identity of Australian prickly acacia (Vachellia nilotica, Fabales: Mimosoideae) – assessing the target for biological control. Biological Control, 155 , Art.104540. https://doi.org/10.1016/j.biocontrol.2021.104540

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Dahanayaka, B. A., Vaghefi, N., Snyman, L. and Martin, A. (2021) Investigating In Vitro Mating Preference Between or Within the Two Forms of Pyrenophora teres and Its Hybrids. Phytopathology®, 111 (12). pp. 2278-2286. https://doi.org/10.1094/phyto-02-21-0058-r

Daniells, J. W. (2021) Mining for gold – Beneath the surface of Goldfinger and beyond. In: Australian Banana Industry Congress, 12-14 May 2021, Cairns, Queensland.

Daniells, J. W. and Janssen, S. B. (2021) Identifying and classifying banana cultivars. In: Achieving sustainable cultivation of bananas: Volume 2: Germplasm and genetic improvement. Burleigh Dodds Science Publishing, United Kingdom. https://doi.org/10.19103/AS.2020.0070.02

Filardo, F. F., Nancarrow, N., Kehoe, M., McTaggart, A. R., Congdon, B., Kumari, S., Aftab, M., Trębicki, P., Rodoni, B., Thomas, J. and Sharman, M. (2021) Genetic diversity and recombination between turnip yellows virus strains in Australia. Archives of Virology, 166 (3). pp. 813-829. https://doi.org/10.1007/s00705-020-04931-w

George-Jaeggli, B., Lefèvre-Arbogast, S., Hunt, C. H., Cruickshank, A. and Jordan, D. R. (2021) Tall 3-dwarfs: oxymoron or opportunity to increase grain yield in sorghum? Planta, 253 (5). p. 110. https://doi.org/10.1007/s00425-021-03629-w

Harris, F., Kanaley, H., Graham, R., Morphett, S., Matthews, P., Roberts, P., Burch, D., Moody, N., Brooke, G., Xing, H. and Mumford, M. H. (2021) Phenology is FUNdamental – applying key project learnings to optimise grain yield. GRDC Update .

Hunt, C. H. (2021) Improved methods of predicting genetic merit in plant breeding programs using linear mixed models. PhD thesis, University of Queensland, 134 pages. https://doi.org/10.14264/06b268c

Jagadeesan, R., Schlipalius, D. I., Singarayan, V. T., Nath, N. S., Nayak, M. K. and Ebert, P. R. (2021) Unique genetic variants in dihydrolipoamide dehydrogenase (dld) gene confer strong resistance to phosphine in the rusty grain beetle, Cryptolestes ferrugineus (Stephens). Pesticide Biochemistry and Physiology, 171 . p. 104717. https://doi.org/10.1016/j.pestbp.2020.104717

Keirnan, E. C., Tan, Y. P., Laurence, M. H., Mertin, A. A., Liew, E. C. Y., Summerell, B. A. and Shivas, R. G. (2021) Cryptic diversity found in Didymellaceae from Australian native legumes. MycoKeys, 78 . pp. 1-20. https://doi.org/10.3897/mycokeys.78.60063

Kelly, A. M., Macdonald, B., Percy, C. and Davies, P. (2021) An improved method for selection of wheat genotypes for tolerance to crown rot caused by Fusarium pseudograminearum. Journal of Phytopathology, 169 (6). pp. 339-349. https://doi.org/10.1111/jph.12970

Kesawat, M. S., Kherawat, B. S., Singh, A., Dey, P., Kabi, M., Debnath, D., Saha, D., Khandual, A., Rout, S., Ali, A., Palem, R. R., Gupta, R., Kadam, A. A., Kim, H.-U., Chung, S.-M. and Kumar, M. (2021) Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.). International Journal of Molecular Sciences, 22 (16). https://doi.org/10.3390/ijms22168743

Kristoffersen, J. and Paynter, M. L. (2021) Developing knowledge and management of Strawberry Red Leaf Disorder. Project Report. Hort Innovation.

Kruse, J., McTaggart, A. R., Dhileepan, K., Musili, P. M., Mutie, F. M., Ntandu, J. E., Edogbanya, P. R. O., Chukwuma, E. C. and Shivas, R. G. (2021) Broad and narrow host ranges in resolved species of Cintractia limitata s. lat. (Anthracoideaceae, Ustilaginomycotina) on Cyperus. Mycological Progress, 20 (2). pp. 191-201. https://doi.org/10.1007/s11557-020-01664-7

Mace, E. S., Cruickshank, A. W., Tao, Y., Hunt, C. H. and Jordan, D. R. (2021) A global resource for exploring and exploiting genetic variation in sorghum crop wild relatives. Crop Science, 61 (1). pp. 150-162. https://doi.org/10.1002/csc2.20332

Martin, A., Poudel, B., Dahanayaka, B. A., McLean, M. S., Snyman, L. and Lopez-Ruiz, F. J. (2021) Advances in understanding the epidemiology, molecular biology and control of net blotch and the net blotch barley interaction. Burleigh Dodds Science Publishing, Cambridge, UK.

Menamo, T., Kassahun, B., Borrell, A. K., Jordan, D. R., Tao, Y., Hunt, C. H. and Mace, E. S. (2021) Genetic diversity of Ethiopian sorghum reveals signatures of climatic adaptation. Theoretical and Applied Genetics, 134 (2). pp. 731-742. https://doi.org/10.1007/s00122-020-03727-5

Morgan, J. A.T., Hall, K.C., Dunning, M.C., Davenport, D.L., Broderick, D., Street, R., Davies, J. and Ovenden, J. R. (2021) The jig is up for Aussie squid fisheries; DNA reveals the truth about Uroteuthis. In: World Fisheries Congress, 21-24 September 2021, Adelaide, Australia.

O'Connor, K. M., Hayes, B. J., Hardner, C. M., Alam, M., Henry, R. J. and Topp, B. L. (2021) Genomic selection and genetic gain for nut yield in an Australian macadamia breeding population. BMC Genomics, 22 (1). p. 370. https://doi.org/10.1186/s12864-021-07694-z

Osama, S. K., Kerr, E. D., Yousif, A. M., Phung, T. K., Kelly, A. M., Fox, G. P. and Schulz, B. L. (2021) Proteomics reveals commitment to germination in barley seeds is marked by loss of stress response proteins and mobilisation of nutrient reservoirs. Journal of Proteomics, 242 . p. 104221. https://doi.org/10.1016/j.jprot.2021.104221

Poudel, B., Shivas, R. G., Adorada, D. L., Barbetti, M. J., Bithell, S. L., Kelly, L. A., Moore, N., Sparks, A. H., Tan, Y. P., Thomas, G., Leur, J. V. and Vaghefi, N. (2021) Hidden diversity of Macrophomina associated with broadacre and horticultural crops in Australia. European Journal of Plant Pathology . https://doi.org/10.1007/s10658-021-02300-0

Raubach, S., Kilian, B., Dreher, K., Amri, A., Bassi, F. M., Boukar, O., Cook, D., Cruickshank, A., Fatokun, C., El Haddad, N., Humphries, A., Jordan, D., Kehel, Z., Kumar, S., Labarosa, S. J., Nguyen, L. H., Mace, E. S., McCouch, S., McNally, K., Marshall, D. F., Mikwa, E. O., Milne, I., Odeny, D. A., Plazas, M., Prohens, J., Rieseberg, L. H., Schafleitner, R., Sharma, S., Stephen, G., Tin, H. Q., Togola, A., Warchefsky, E., Werner, P., Partners, A. o. C. P.-B. and Shaw, P. D. (2021) From bits to bites: advancement of the germinate platform to support genetic resources collections and pre-breeding informatics for crop wild relatives. Crop Science, 61 (3), Special. pp. 1538-1566. https://doi.org/10.1002/csc2.20248

Rodrigues Jardim, B., Kinoti, W. M., Tran-Nguyen, L. T. T., Gambley, C., Rodoni, B. and Constable, F. E. (2021) ‘Candidatus Phytoplasma stylosanthis’, a novel taxon with a diverse host range in Australia, characterised using multilocus sequence analysis of 16S rRNA, secA, tuf, and rp genes. International Journal of Systematic and Evolutionary Microbiology, 71 (1). https://doi.org/10.1099/ijsem.0.004589

Saxena, K. B., Wallis, E.S., Chauhan, Y. S. and Byth, D.E. (2021) Inheritance of photo-sensitivity in pigeonpea. Indian Journal of Genetics, 81 (1).

Sharman, M., Appiah, A. S., Filardo, F. F., Nancarrow, N., Congdon, B. S., Kehoe, M., Aftab, M., Tegg, R. S. and Wilson, C. R. (2021) Biology and genetic diversity of phasey bean mild yellows virus, a common virus in legumes in Australia. Archives of Virology, 166 . pp. 1575-1589. https://doi.org/10.1007/s00705-021-05022-0

Singarayan, V. T., Jagadeesan, R., Nayak, M. K., Ebert, P. R. and Daglish, G. J. (2021) Gene introgression in assessing fitness costs associated with phosphine resistance in the rusty grain beetle. Journal of Pest Science . https://doi.org/10.1007/s10340-020-01315-6

Smith, M. W. (2021) Building a genetic foundation for Australia’s citrus future. Project Report. Hort Innovation.

Tao, Y., Luo, H., Xu, J., Cruickshank, A., Zhao, X., Teng, F., Hathorn, A., Wu, X., Liu, Y., Shatte, T., Jordan, D., Jing, H. and Mace, E. S. (2021) Extensive variation within the pan-genome of cultivated and wild sorghum. Nature Plants, 7 . pp. 766-773. https://doi.org/10.1038/s41477-021-00925-x

Tao, Y., Trusov, Y., Zhao, X., Wang, X., Cruickshank, A. W., Hunt, C. H., van Oosterom, E. J., Hathorn, A., Liu, G., Ian, G. D., Botella, J. R., Mace, E. S. and Jordan, D. R. (2021) Manipulating assimilate availability provides insight into the genes controlling grain size in sorghum. The Plant Journal, 108 (1). pp. 231-243. https://doi.org/10.1111/tpj.15437

Thomas, J. E., Raymond, M., Tran, N. T., Crew, K. S., Teo, A. C. and Geering, A. D. W. (2021) Complete genome sequences and properties of Spartina mottle virus isolates from hybrid Bermuda grass (Cynodon dactylon × Cynodon transvaalensis). Plant Pathology, 70 (5). pp. 1062-1071. https://doi.org/10.1111/ppa.13357

Thudi, M., Palakurthi, R., Schnable, J. C., Chitikineni, A., Dreisigacker, S., Mace, E. S., Srivastava, R. K., Satyavathi, C. T., Odeny, D., Tiwari, V. K., Lam, H.-M., Hong, Y. B., Singh, V. K., Li, G., Xu, Y., Chen, X., Kaila, S., Nguyen, H., Sivasankar, S., Jackson, S. A., Close, T. J., Shubo, W. and Varshney, R. K. (2021) Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology, 257 . p. 153351. https://doi.org/10.1016/j.jplph.2020.153351

Tran, N. T., Teo, A. C., Crew, K. S., Campbell, P. R., Thomas, J. E. and Geering, A. D. W. (2021) Genome sequence and geographic distribution of a new nepovirus infecting Stenotaphrum secundatum in Australia. Virus Research, 305 . p. 198554. https://doi.org/10.1016/j.virusres.2021.198554

Vaghefi, N., Adorada, D., Huth, L., Kelly, L. A., Poudel, B., Young, A. and Sparks, A. L. (2021) Whole genome data from Curtobacterium flaccumfaciens pv. flaccumfaciens strains associated with tan spot of mungbean and soybean reveal diverse plasmid profiles. Molecular Plant-Microbe Interactions®, 34 (10). pp. 1216-1222. https://doi.org/10.1094/MPMI-05-21-0116-A

Wilkie, J. D. (2021) Transforming subtropical/tropical tree crop productivity. Project Report. Hort Innovation.

2020

Arlotta, C., Ciacciulli, A., Strano, M. C., Cafaro, V., Salonia, F., Caruso, P., Licciardello, C., Russo, G., Smith, M. W., Cuenca, J., Aleza, P. and Caruso, M. (2020) Disease Resistant Citrus Breeding Using Newly Developed High Resolution Melting and CAPS Protocols for Alternaria Brown Spot Marker Assisted Selection. Agronomy, 10 (9). https://doi.org/10.3390/agronomy10091368

Bonora, F. S., Nahrung, H. F., Hayes, R. A., Pegg, G. S. and Lee, D. J. (2020) Does disease severity impact on plant foliar chemical and physical responses to two Corymbia citriodora subsp. variegata pathogens? Industrial Crops and Products, 148 . p. 112288. https://doi.org/10.1016/j.indcrop.2020.112288

Borrell, A. K., Van Oosterom, E. J., George-Jaeggli, B., Vadez, V., Singh, V. and Hammer, G. L. (2020) Physiology of Growth, Development and Yield. In: Sorghum in the 21st Century: Food – Fodder – Feed – Fuel for a Rapidly Changing World. Springer.

Caruso, M., Smith, M. W., Froelicher, Y., Russo, G. and Gmitter, F. G. (2020) Traditional breeding. In: The Genus Citrus. Woodhead Publishing. https://doi.org/10.1016/B978-0-12-812163-4.00007-3

Cheah, Z.X., Harper, S. M., O'Hare, T.J. and Bell, M.J. (2020) Elevated zinc concentration in zeaxanthin-biofortified sweetcorn kernels compared with a commercial hybrid. Acta Horticulturae, 1292 . pp. 399-404. https://doi.org/10.17660/actahortic.2020.1292.53

Cheah, Z. X., O’Hare, T. J., Harper, S. M. and Bell, M. J. (2020) Variation in zinc concentration of sweetcorn kernels reflects source–sink dynamics influenced by kernel number. Journal of Experimental Botany, 71 (16). pp. 4985-4992. https://doi.org/10.1093/jxb/eraa244

Christopher, J., Richard, C., Chenu, K., Christopher, M. J., Paccapelo, V., Borrell, A. K. and Hickey, L. (2020) Genomics of Root and Stay-Green Traits to Improve Wheat Adaptation to Late Season Drought. In: Plant and Animal Genome XXVIII Conference 2020, January 11-15, 2020, San Diego, USA.

Constantin, M., Jagadeesan, R., Chandra, K. A., Ebert, P. and Nayak, M. K. (2020) Synergism Between Phosphine (PH3) and Carbon Dioxide (CO2): Implications for Managing PH3 Resistance in Rusty Grain Beetle (Laemophloeidae: Coleoptera). Journal of Economic Entomology, 113 (4). pp. 1999-2006. https://doi.org/10.1093/jee/toaa081

Crous, P. W., Wingfield, M. J., Chooi, Y. H., Gilchrist, C. L. M., Lacey, E., Pitt, J. I., Roets, F., Swart, W. J., Cano-Lira, J. F., Valenzuela-Lopez, N., Hubka, V., Shivas, R. G., Stchigel, A. M., Holdom, D. G., Jurjević, Ž., Kachalkin, A. V., Lebel, T., Lock, C., Kelly, L. A., Tan, Y. P. and Bransgrove, K. (2020) Fungal Planet description sheets: 1042-1111. Persoonia - Molecular Phylogeny and Evolution of Fungi, 44 (1). pp. 301-459. https://doi.org/10.3767/persoonia.2020.44.11

Crous, P.W., Cowan, D.A., Maggs-Kölling, G., Yilmaz, N., Larsson, E., Angelini, C., Brandrud, T.E., Dearnaley, J.D.W., Dima, B., Dovana, F. and Shivas, R. G. (2020) Fungal Planet description sheets: 1112–1181. Persoonia: Molecular Phylogeny and Evolution of Fungi, 45 . pp. 251-409. https://doi.org/10.3767/persoonia.2020.45.10

Cullis, B. R., Smith, A. B., Cocks, N. A. and Butler, D. G. (2020) The Design of Early-Stage Plant Breeding Trials Using Genetic Relatedness. Journal of Agricultural, Biological and Environmental Statistics, 25 . pp. 553-578. https://doi.org/10.1007/s13253-020-00403-5

Daglish, G. J., Jagadeesan, R., Nayak, M. K., McCulloch, G. A., Singarayan, V. T. and Walter, G. H. (2020) The Gene Introgression Approach and the Potential Cost of Genes that Confer Strong Phosphine Resistance in Red Flour Beetle (Coleoptera: Tenebrionidae). Journal of Economic Entomology, 113 (3). pp. 1547-1554. https://doi.org/10.1093/jee/toaa033

Douglas, C. A., Pratap, A., Rao, B. H., Manu, B., Dubey, S., Singh, P. and Tomar, R. (2020) Breeding Progress and Future Challenges: Abiotic Stresses. In: The Mungbean Genome. Springer. https://doi.org/10.1007/978-3-030-20008-4_6

Dreccer, F., Macdonald, B., Condon, A. G., Rebetzke, G. J., McIntyre, C. L., Paccapelo, V., Peake, A. S. and Forrest, K. (2020) Better wheat germplasm for good seasons and high inputs. GRDC Update .

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Firacative, C., Khan, A., Duan, S., Ferreira-Paim, K., Leemon, D. and Meyer, W. (2020) Rearing and Maintenance of Galleria mellonella and Its Application to Study Fungal Virulence. Journal of Fungi, 6 (3), 130. pp. 1-13. https://doi.org/10.3390/jof6030130

Fox, G., Nugusu, Y., Nida, H., Tedessa, T., McLean, G. and Jordan, D. (2020) Evaluation of variation in Ethiopian sorghum injera quality with new imaging techniques. Cereal Chemistry, 97 (2). pp. 362-372. https://doi.org/10.1002/cche.10252

Gaffney, J., Tibebu, R., Bart, R., Beyene, G., Girma, D., Kane, N. A., Mace, E. S., Mockler, T., Nickson, T. E., Taylor, N. and Zastrow-Hayes, G. (2020) Open access to genetic sequence data maximizes value to scientists, farmers, and society. Global Food Security, 26 . p. 100411. https://doi.org/10.1016/j.gfs.2020.100411

Gomez, A., De Faveri, J., Neal, J. M., Aitken, E. and Herrington, M. (2020) Response of Strawberry Cultivars Inoculated with Macrophomina phaseolina in Australia. International Journal of Fruit Science, 20 (Supp 2). pp. 164-177. https://doi.org/10.1080/15538362.2019.1709114

Harris, F., Xing, H., Burch, D., Brooke, G., Aisthorpe, D., Matthews, P. and Graham, R. (2020) Yield stability across sowing dates – how to pick a winner in variable seasons? GRDC Update .

Hunt, C. H., Hayes, B. J., van Eeuwijk, F. A., Mace, E. S. and Jordan, D. R. (2020) Multi-environment analysis of sorghum breeding trials using additive and dominance genomic relationships. Theoretical and Applied Genetics, 133 . pp. 1009-1018. https://doi.org/10.1007/s00122-019-03526-7

Ireland, K. B. and Pegg, G. S. (2020) Effect of Austropuccinia psidii inoculum concentration on myrtle rust disease incidence and severity. Australasian Plant Pathology, 49 (3). pp. 239-243. https://doi.org/10.1007/s13313-020-00699-4

Jalaludin, A., Widderick, M., Broster, J., Chambers, A. J. and Walsh, M. (2020) Herbicide resistance survey results of the Northern cropping region. GRDC Update .

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Miranda, J. H. (2019) Single plant selection for improving root rot disease (Phytophthora medicaginis) resistance in Chickpeas (Cicer arietinum L.). Euphytica, 215 (5). p. 91. https://doi.org/10.1007/s10681-019-2389-2

Mulo, S. (2019) Benchmarking and farm economics of Australian macadamia production: What makes a modern orchard productive? In: TropAg 2019 International Tropical Agriculture Conference - Shaping the Science of Tomorrow, 11 - 13 November 2019, Brisbane, Australia.

Nair, R. M., Pandey, A. K., War, A. R., Hanumantharao, B., Shwe, T., Alam, A., Pratap, A., Malik, S. R., Karimi, R., Mbeyagala, E. K., Douglas, C. A., Rane, J. and Schafleitner, R. (2019) Biotic and Abiotic Constraints in Mungbean Production—Progress in Genetic Improvement. Frontiers in Plant Science, 10 (1340). https://doi.org/10.3389/fpls.2019.01340

Novakazi, F., Afanasenko, O., Anisimova, A., Platz, G. J., Snowdon, R., Kovaleva, O., Zubkovich, A. and Ordon, F. (2019) Genetic analysis of a worldwide barley collection for resistance to net form of net blotch disease (Pyrenophora teres f. teres). Theoretical and Applied Genetics . https://doi.org/10.1007/s00122-019-03378-1

Nurulita, S., Geering, A., Crew, K. S., Harper, S. and Thomas, J. (2019) Investigation of the basis behind selection of superior and inferior garlic lines from uniformly virus-infected cultivars. In: Australasian Plant Pathology Society Conference APPS 2019 Strong Foundations, Future Innovations, 25-28 November 2019, Melbourne, Australia.

O'Connor, K. M. (2019) Selection strategies to improve yield in macadamia using component traits and genomics. PhD thesis, University of Queensland, 186 pages.

O'Connor, K. M., Hayes, B., Hardner, C., Alam, M. and Topp, B. L. (2019) Selecting for Nut Characteristics in Macadamia Using a Genome-wide Association Study. HortScience horts, 54 (4). pp. 629-632. https://doi.org/10.21273/HORTSCI13297-18

O'Connor, K. M., Kilian, A., Hayes, B., Hardner, C., Nock, C., Baten, A., Alam, M. and Topp, B. L. (2019) Population structure, genetic diversity and linkage disequilibrium in a macadamia breeding population using SNP and silicoDArT markers. Tree Genetics & Genomes, 15 (2). p. 24. https://doi.org/10.1007/s11295-019-1331-z

Oosterom, E. v., McLean, G., Deifel, K., Singh, V., Jordan, D. and Hammer, G. (2019) Modelling Heat and Drought Adaptation in Crops. Proceedings, 36 (1). https://doi.org/10.3390/proceedings2019036190

Petronaitis, T., Forknall, C. R., Brodie, G., Simpfendorfer, S. and Backhouse, D. (2019) Using microwave radiation to destroy macroconidia of the cereal pathogen Fusarium pseudograminearum: a hot solution? In: Australasian Plant Pathology Society Conference APPS 2019 Strong Foundations, Future Innovations, 25-28 November 2019, Melbourne, Australia.

Potgieter, A. B., Watson, J., George-Jaeggli, B., McLean, G., Eldridge, M., Chapman, S. C., Laws, K., Christopher, J., Chenu, K., Borrell, A., Hammer, G. and Jordan, D. R. (2019) The use of hyperspectral proximal sensing for phenotyping of plant breeding trials. In: Fundamentals, Sensor Systems, Spectral Libraries, and Data Mining for Vegetation. CRC Press Taylor and Francis Group, Boca Raton FL, United States.

Poudel, B., Vaghefi, N., McLean, M. S., Platz, G. J., Sutherland, M. W. and Martin, A. (2019) Genetic structure of a Pyrenophora teres f. teres population over time in an Australian barley field as revealed by DArT markers. Plant Pathology, 68 (7). pp. 1331-1336. https://doi.org/10.1111/ppa.13035

Reen, R. A., Mumford, M. H. and Thompson, J. P. (2019) Novel Sources of Resistance to Root-Lesion Nematode (Pratylenchus thornei) in a New Collection of Wild Cicer Species (C. reticulatum and C. echinospermum) to Improve Resistance in Cultivated Chickpea (C. arietinum). Phytopathology, 109 (7). pp. 1270-1279. https://doi.org/10.1094/PHYTO-02-19-0047-R

Roach, R. L., Mann, R., Gambley, C., Chapman, T., Shivas, R. G. and Rodoni, B. (2019) Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli. BMC Genomics, 20 (1). p. 310. https://doi.org/10.1186/s12864-019-5600-x

Robinson, N. A., Sheedy, J. G., Macdonald, B., Owen, K. J. and Thompson, J. P. (2019) Tolerance of wheat cultivars to root-lesion nematode (Pratylenchus thornei) assessed by normalised difference vegetation index is predictive of grain yield. Annals of Applied Biology, 174 (3). pp. 388-401. https://doi.org/10.1111/aab.12504

Rodrigues Jardim, B., Kinoti, W., Tran-Nguyen, L. T.T., Gambley, C., Rodoni, B. and Constable, F. (2019) Towards improving phytoplasma taxonomy using phylogenetics and phylogenomics: A focus on Australian 16Sr II phytoplasmas. In: Australasian Plant Pathology Society Conference APPS 2019 Strong Foundations, Future Innovations, 25-28 November 2019, Melbourne, Australia.

Sawyer, A., Shuey, L. S., Pegg, K. G., Coates, L. M., Carroll, B. and Mitter, N. (2019) RNA sprays to combat plant pathogenic fungi. In: Australasian Plant Pathology Society Conference APPS 2019 Strong Foundations, Future Innovations, 25-28 November 2019, Melbourne, Australia.

Shivas, R. G., Beasley, D. R., Bransgrove, K., Tan, Y. P. and Bulow, G. (2019) Biodiscovery and the Queensland Plant Pathology Herbarium. Microbiology Australia, 40 (3). pp. 134-137.

Shuey, L. S., Pegg, K. G., Dodd, S., Manners, A. G., White, D., Burgess, T. I., Johnson, S. K. and Pegg, G. S. (2019) Araucaria dieback- a threat to native and plantation forests. In: Australasian Plant Pathology Society Conference APPS 2019 Strong Foundations, Future Innovations, 25-28 November 2019, Melbourne, Australia.

Singh, C. M., Singh, P., Pratap, A., Pandey, R., Purwar, S., Douglas, C. A., Baek, K.-H. and Mishra, A. K. (2019) Breeding for Enhancing Legumovirus Resistance in Mungbean: Current Understanding and Future Directions. Agronomy, 9 (10). p. 622. https://doi.org/10.3390/agronomy9100622

Smith, O., Nicholson, W. V., Kistler, L., Mace, E. S., Clapham, A., Rose, P., Stevens, C., Ware, R., Samavedam, S., Barker, G., Jordan, D., Fuller, D. Q. and Allaby, R. G. (2019) A domestication history of dynamic adaptation and genomic deterioration in Sorghum. Nature Plants, 5 (4). pp. 369-379. https://doi.org/10.1038/s41477-019-0397-9

Smith, G., Chagné, D., Ganley, B., Nadarajan, J., Pathirana, R., Ryan, J., Arnst, E., Sutherland, R., Soewarto, J., Houliston, G., Marsh, A., Koot, E., Carnegie, A., Shuey, L. S. and Pegg, G. S. (2019) New Zealand provenance Leptospermum scoparium (mānuka) expresses three resistance phenotypes to the pandemic biotype of Austropuccinia psidii, the causal pathogen of myrtle rust. In: Australasian Plant Pathology Society Conference APPS 2019 Strong Foundations, Future Innovations, 25-28 November 2019, Melbourne, Australia.

Smith, M. W., Webb, M., Gultzow, D. L., Newman, T. K., Innes, D. J., Dillon, N. L., Owen-Turner, J. and Xu, Q. (2019) Application of a MITE Citrus apomixis marker in the Australian rootstock breeding program. Acta Horticulturae, 1230 . pp. 1-6. https://doi.org/10.17660/ActaHortic.2019.1230.1

Stirling, K., Muller, C., Atkinson, A., Rowling, J., Reid, A., Jones, P., Chilman, L. and Gomez, A. (2019) Australian Strawberry Good Practice Guide. Manual. Hort Innovation.

Tan, Y. P. (2019) Taxonomy and biodiversity of plant pathogenic fungi from Australia. PhD thesis, Utrecht University, 170 pages.

Topp, B. L., Nock, C. J., Hardner, C. M., Alam, M. and O'Connor, K. M. (2019) Macadamia (Macadamia spp.) Breeding. In: Advances in Plant Breeding Strategies: Nut and Beverage Crops: Volume 4. Springer International Publishing, Cham. https://doi.org/10.1007/978-3-030-23112-5_7

Vaghefi, N., Adorada, D., Adorada, E., Kelly, L. A., Young, A. and Sparks, A. H. (2019) What can we learn from population genomics studies of Curtobacterium flaccumfaciens pv. flaccumfaciens, the cause of tan spot on mungbean? In: Australasian Plant Pathology Society Conference APPS 2019 Strong Foundations, Future Innovations, 25-28 November 2019, Melbourne, Australia.

Velazco, J. G., Jordan, D. R., Mace, E. S., Hunt, C. H., Malosetti, M. and van Eeuwijk, F. A. (2019) Genomic prediction of grain yield and drought-adaptation capacity in sorghum is enhanced by multi-trait analysis. Frontiers in Plant Science, 10 . p. 997.

Velazco, J. G., Malosetti, M., Hunt, C. H., Mace, E. S., Jordan, D. R. and van Eeuwijk, F. A. (2019) Combining pedigree and genomic information to improve prediction quality: an example in sorghum. Theoretical and Applied Genetics, 132 (7). pp. 2055-2067. https://doi.org/10.1007/s00122-019-03337-w

Whish, J., Bell, L., DeVoil, P., Zull, A. F. and Thornby, D. (2019) Simulating the efficiency and resilience of diverse crop sequences in Australia’s subtropical cropping zone. In: Proceedings of the 2019 Agronomy Australian Conference, 25 – 29 August 2019, Wagga Wagga, Australia.

2018

Ahsan, M. U., Hayward, A., Powell, R., Wilkie, J., Beveridge, C. and Mitter, N. (2018) MicroRNA control of flowering and annual crop cycle in tropical/subtropical horticultural trees. Acta Horticulturae, 1205 . pp. 681-686.

Alam, M., Neal, J. M., O'Connor, K. M., Kilian, A. and Topp, B. (2018) Ultra-high-throughput DArTseq-based silicoDArT and SNP markers for genomic studies in macadamia. PLoS ONE, 13 (8). https://doi.org/10.1371/journal.pone.0203465

Alam, M. M., Howell, E., Hardner, C. M. and Topp, B. L. (2018) Variation in precocity in a macadamia breeding population. Acta Horticulturae, 1205 (Intern). pp. 645-652. https://doi.org/10.17660/ActaHortic.2018.1205.80

Alam, M. M., Wilkie, J. and Topp, B. L. (2018) Early growth and graft success in macadamia seedling and cutting rootstocks. Acta Horticulturae, 1205 (Intern). pp. 637-644. https://doi.org/10.17660/ActaHortic.2018.1205.79

Alam, M.W., Neal, J. M., Howell, E., Russell, D. and Topp, B. (2018) ‘MPM1’: a macadamia hybrid showing breakdown of biological rhythm in morphogenesis. Acta Horticulturae, 1205 (Intern). pp. 631-636. https://doi.org/10.17660/ActaHortic.2018.1205.78

Anzooman, M., Dang, Y. P., Christopher, J., Mumford, M. H., Menzies, N.W. and Kopittke, P. M. (2018) Greater emergence force and hypocotyl cross sectional area may improve wheat seedling emergence in sodic conditions. Plant Science . https://doi.org/10.1016/j.plantsci.2018.09.007

Anzooman, M., Dang, Y. P., Christopher, J., Mumford, M. H., Menzies, N. W. and Kopittke, P. M. (2018) Dataset on seed details of wheat genotypes, solution treatments to measure seedling emergence force and the relation between seedling force and strain. Data in Brief, 21 . pp. 1598-1602. https://doi.org/10.1016/j.dib.2018.10.134

Bally, I. S.E. and Dillon, N. L. (2018) Mango (Mangifera indica L.) Breeding. In: Advances in Plant Breeding Strategies: Fruits. Springer. https://doi.org/10.1007/978-3-319-91944-7_20

Barton, D. P., Smales, L. and Morgan, J. A.T. (2018) A Redescription of Serrasentis sagittife (Rhadinorhynchidae: Serrasentinae) from Rachycentron canadum (Rachycentridae) with Comments on its Biology and its Relationship to Other Species of Serrasentis. Journal of Parasitology, 104 (2). pp. 117-132. https://doi.org/10.1645/17-94

Bossa-Castro, A. M., Tekete, C., Raghavan, C., Delorean, E. E., Dereeper, A., Dagno, K., Koita, O., Mosquera, G., Leung, H., Verdier, V. and Leach, J. E. (2018) Allelic variation for broad-spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population. Plant Biotechnology Journal, 16 (9). pp. 1559-1568. https://doi.org/10.1111/pbi.12895

Chapman, S. C., Zheng, B., Potgieter, A., Guo, W., Frederic, B., Liu, S., Madec, S., de Solan, B., George-Jaeggli, B., Hammer, G. L. and Jordan, D. R. (2018) Visible, Near Infrared, and Thermal Spectral Radiance On-Board UAVs for High-Throughput Phenotyping of Plant Breeding Trials. In: Biophysical and Biochemical Characterization and Plant Species Studies. Hyperspectral Remote Sensing of Vegetation . CRC Press. https://doi.org/10.1201/9780429431180

Cheah, Z. X., Kopittke, P. M., Harper, S. M., O'Hare, T. J., Wang, P., Paterson, D. J., de Jonge, M. D. and Bell, M. J. (2018) In situ analyses of inorganic nutrient distribution in sweetcorn and maize kernels using synchrotron-based X-ray fluorescence microscopy. Annals of Botany, 123 (3). pp. 543-556. https://doi.org/10.1093/aob/mcy189

Chenu, K., Van Oosterom, E. J., McLean, G., Deifel, K. S., Fletcher, A., Geetika, G., Tirfessa, A., Mace, E. S., Jordan, D. R., Sulman, R. and Hammer, G. L. (2018) Integrating modelling and phenotyping approaches to identify and screen complex traits: transpiration efficiency in cereals. Journal of Experimental Botany, 69 (13). pp. 3181-3194. https://doi.org/10.1093/jxb/ery059

Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G., Gene, J., Guarro, J., Baseia, I. G., Garcia, D., Gusmao, L. F. P., Souza-Motta, C. M., Thangavel, R., Adamcik, S., Barili, A., Barnes, C. W., Bezerra, J. D. P., Bordallo, J. J., Cano-Lira, J. F., de Oliveira, R. J. V., Ercole, E., Hubka, V., Iturrieta-Gonzalez, I., Kubatova, A., Martin, M. P., Moreau, P. A., Morte, A., Ordonez, M. E., Rodriguez, A., Stchigel, A. M., Vizzini, A., Abdollahzadeh, J., Abreu, V. P., Adamcikova, K., Albuquerque, G. M. R., Alexandrova, A. V., Duarte, E. A., Armstrong-Cho, C., Banniza, S., Barbosa, R. N., Bellanger, J. M., Bezerra, J. L., Cabral, T. S., Cabon, M., Caicedo, E., Cantillo, T., Carnegie, A. J., Carmo, L. T., Castaneda-Ruiz, R. F., Clement, C. R., Cmokova, A., Conceicao, L. B., Cruz, R., Damm, U., da Silva, B. D. B., da Silva, G. A., da Silva, R. M. F., Santiago, A., de Oliveira, L. F., de Souza, C. A. F., Deniel, F., Dima, B., Dong, G., Edwards, J., Felix, C. R., Fournier, J., Gibertoni, T. B., Hosaka, K., Iturriaga, T., Jadan, M., Jany, J. L., Jurjevic, Z., Kolarik, M., Kusan, I., Landell, M. F., Cordeiro, T. R. L., Lima, D. X., Loizides, M., Luo, S., Machado, A. R., Madrid, H., Magalhaes, O. M. C., Marinho, P., Matocec, N., Mesic, A., Miller, A. N., Morozova, O. V., Neves, R. P., Nonaka, K., Novakova, A., Oberlies, N. H., Oliveira-Filho, J. R. C., Oliveira, T. G. L., Papp, V., Pereira, O. L., Perrone, G., Peterson, S. W., Pham, T. H. G., Raja, H. A., Raudabaugh, D. B., Rehulka, J., Rodriguez-Andrade, E., Saba, M., Schauflerova, A., Shivas, R. G., Simonini, G., Siqueira, J. P. Z., Sousa, J. O., Stajsic, V., Svetasheva, T., Tan, Y. P., Tkalcec, Z., Ullah, S., Valente, P., Valenzuela-Lopez, N., Abrinbana, M., Marques, D. A. V., Wong, P. T. W., de Lima, V. X. and Groenewald, J. Z. (2018) Fungal Planet description sheets: 716-784. Persoonia, 40 . pp. 240-393. https://doi.org/10.3767/persoonia.2018.40.10

Czislowski, E., Fraser-Smith, S., Zander, M., O'Neill, W. T., Meldrum, R. A., Tran-Nguyen, L. T. T., Batley, J. and Aitken, E. A. B. (2018) Investigation of the diversity of effector genes in the banana pathogen, Fusarium oxysporum f.sp. cubense, reveals evidence of horizontal gene transfer. Molecular Plant Pathology, 19 (5). pp. 1155-1171. https://doi.org/10.1111/mpp.12594

Dinglasan, E. G., Godwin, I. D., Phan, H. T. T., Tan, K. C., Platz, G. J. and Hickey, L. T. (2018) Vavilov wheat accessions provide useful sources of resistance to tan spot (syn. yellow spot) of wheat. Plant Pathology, 67 (5). pp. 1076-1087.

Hereward, J. P., Werth, J. A., Thornby, D. F., Keenan, M., Chauhan, B. S. and Walter, G. H. (2018) Gene expression in response to glyphosate treatment in fleabane (Conyza bonariensis) – glyphosate death response and candidate resistance genes. Pest Management Science, 74 (10). pp. 2346-2355.

Herrington, M. (2018) National Strawberry Varietal Improvement Program. Project Report. Horticulture Australia.

Hiti Bandaralage, J. C. A., Hayward, A., O’Brien, C. and Mitter, N. (2018) Temporal profile of juvenility-associated microRNAs during tissue culture of avocado. Acta Horticulturae, 1205 . pp. 779-784. https://doi.org/10.17660/ActaHortic.2018.1205.97

Kumari, S. G., Moukahel, A. R., Hamed, A. A. and Sharman, M. (2018) First Report of Cucurbit aphid-borne yellows virus Affecting Chickpea (Cicer arietinum L.) in Sudan. Plant Disease, 102 (10). p. 2048. https://doi.org/10.1094/PDIS-02-18-0347-PDN

McTaggart, A. R., Duong, T. A., Le, V. Q., Shuey, L. S., Smidt, W., Naidoo, S., Wingfield, M. J. and Wingfield, B. D. (2018) Chromium sequencing: The doors open for genomics of obligate plant pathogens. BioTechniques, 65 (5). pp. 253-257. https://doi.org/10.2144/btn-2018-0019

McTaggart, A. R., Shuey, L. S., Granados, G. M., du Plessis, E., Fraser, S., Barnes, I., Naidoo, S., Wingfield, M. J. and Roux, J. (2018) Evidence that Austropuccinia psidii may complete its sexual life cycle on Myrtaceae. Plant Pathology, 67 (3). pp. 729-734. https://doi.org/10.1111/ppa.12763

Mizani, A., Bally, I. S.E., Ibell, P., Wright, C. L., Maddox, C. and Kolala, R. (2018) Identifying vigour controlling rootstocks for mango. Acta Horticulturae, 1228 . pp. 331-338. https://doi.org/10.17660/ActaHortic.2018.1228.25

Moyle, R., Pretorius, L. S., Shuey, L. S., Nowak, E. and Schenka, P. M. (2018) Analysis of the complete genome sequence of Cucumber mosaic virus strain K. Genome Announcements, 6 (7). https://doi.org/10.1128/genomeA.00053-18

Naidoo, S., Visser, E. A., Zwart, L., Toit, Y. D., Bhadauria, V. and Shuey, L. S. (2018) Dual RNA-Sequencing to Elucidate the Plant-Pathogen Duel. Current issues in molecular biology, 27 . pp. 127-142. https://doi.org/10.21775/cimb.027.127

O'Connor, K. M., Hayes, B. and Topp, B. (2018) Prospects for increasing yield in macadamia using component traits and genomics. Tree Genetics & Genomes, 14 (1). p. 7. https://doi.org/10.1007/s11295-017-1221-1

Patriyawaty, N. R., Rachaputi, R. C. N., George, D. and Douglas, C. A. (2018) Genotypic variability for tolerance to high temperature stress at reproductive phase in Mungbean [Vigna radiata (L.) Wilczek]. Scientia Horticulturae, 227 (Supple). pp. 132-141. https://doi.org/10.1016/j.scienta.2017.09.017

Riaz, A., Athiyannan, N., Periyannan, S. K., Afanasenko, O., Mitrofanova, O. P., Platz, G. J., Aitken, E. A. B., Snowdon, R. J., Lagudah, E. S., Hickey, L. T. and Voss-Fels, K. P. (2018) Unlocking new alleles for leaf rust resistance in the Vavilov wheat collection. Theoretical and Applied Genetics, 131 . pp. 127-144. https://doi.org/10.1007/s00122-017-2990-5

Richard, C., Christopher, J., Chenu, K., Borrell, A., Christopher, M. J. and Hickey, L. (2018) Selection in Early Generations to Shift Allele Frequency for Seminal Root Angle in Wheat. The Plant Genome, 11 (2). https://doi.org/10.3835/plantgenome2017.08.0071

Roach, R. L. (2018) Identification and classification of Xanthomonas spp. causing bacterial leaf spot on capsicum, chilli and tomato in Australia. PhD thesis, La Trobe University.

Roach, R. L., Mann, R., Gambley, C., Shivas, R. G. and Rodoni, B. (2018) Identification of Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli crops in eastern Australia. European Journal of Plant Pathology, 150 . pp. 595-608. https://doi.org/10.1007/s10658-017-1303-9

Robinson, H., Kelly, A. M., Fox, G., Franckowiak, J., Borrell, A. and Hickey, L. (2018) Root architectural traits and yield: exploring the relationship in barley breeding trials. Euphytica, 214 (9). https://doi.org/10.1007/s10681-018-2219-y

Robinson, H., Kandic, V., Christopher, J., Fox, G., Kelly, A. M., Borrell, A. and Hickey, L. (2018) Root traits for yield improvement in barley. GRDC Update Papers .

Russell, D. (2018) Macadamia Regional Variety Trials Series 3, Phase 2. Project Report. Hort Innovation.

Sanewski, G. M. (2018) The History of Pineapple Improvement. In: Genetics and Genomics of Pineapple. Springer.

Sanewski, G. M., d'Eeckenbrugge, G. C. and Junghans, D. T. (2018) Varieties and breeding. In: The pineapple: botany, production and uses. CAB International, Wallingford. https://doi.org/10.1079/9781786393302.0042

Sardos, J., Christelová, P., Cížková, J., Paofa, J., Sachter-Smith, G. L., Janssens, S. B., Rauka, G., Ruas, M., Daniells, J. W., Doležel, J. and Roux, N. (2018) Collection of new diversity of wild and cultivated bananas (Musa spp.) in the Autonomous Region of Bougainville, Papua New Guinea. Genetic Resources and Crop Evolution, 65 (8). pp. 2267-2286. https://doi.org/10.1007/s10722-018-0690-x

Saxena, K.B., Chauhan, Y. S., Kumar, C.V.S., Hingane, A.G., Rao, G.V.S. and Saxena, R.K. (2018) Developing improved varieties of pigeonpea. In: Achieving sustainable cultivation of grain legumes. Burleigh Dodds, UK. https://doi.org/10.19103/AS.2017.0023.33

Schlipalius, D. I., Tuck, A. G., Jagadeesan, R., Nguyen, T., Kaur, R., Subramanian, S., Barrero, R., Nayak, M. K. and Ebert, P. R. (2018) Variant Linkage Analysis Using de Novo Transcriptome Sequencing Identifies a Conserved Phosphine Resistance Gene in Insects. Genetics, 209 (1). pp. 281-290. https://doi.org/10.1534/genetics.118.300688

Schmidt, D. J., Fallon, S., Roberts, D. T., Espinoza, T., McDougall, A., Brooks, S. G., Kind, P. K., Bond, N. R., Kennard, M. J. and Hughes, J. M. (2018) Monitoring age-related trends in genomic diversity of Australian lungfish. Molecular Ecology, 27 (16). pp. 3231-3241. https://doi.org/10.1111/mec.14791

Seyoum, S., Rachaputi, R., Chauhan, Y. S., Prasanna, B. and Fekybelu, S. (2018) Application of the APSIM model to exploit G × E × M interactions for maize improvement in Ethiopia. Field Crops Research, 217 . pp. 113-124. https://doi.org/10.1016/j.fcr.2017.12.012

Smith, O., Nicholson, W. V., Kistler, L., Mace, E. S., Clapham, A., Rose, P., Stevens, C., Ware, R. L., Samavedam, S., Barker, G., Jordan, D., Fuller, D. Q. and Allaby, R. G. (2018) A domestication history of dynamic adaptation and genomic deterioration in sorghum. bioRxiv . https://doi.org/10.1101/336503

Smith, M. (2018) Conserving banana germplasm through field genebanks. In: Achieving sustainable cultivation of bananas. Burleigh Dodds Science Publishing Limited..

Tan, Y. P., Shivas, R. G., Marney, T. S., Edwards, J., Dearnaley, J., Jami, F. and Burgess, T. I. (2018) Australian cultures of Botryosphaeriaceae held in Queensland and Victoria plant pathology herbaria revisited. Australasian Plant Pathology, 48 (1). pp. 25-34. https://doi.org/10.1007/s13313-018-0559-7

Tao, Y., Mace, E. S., George-Jaeggli, B., Hunt, C. H., Cruickshank, A., Henzell, R. and Jordan, D. (2018) Novel grain weight loci revealed in a cross between cultivated and wild sorghum. Plant Genome, 11 (2). https://doi.org/10.3835/plantgenome2017.10.0089

Voss-Fels, K. P., Robinson, H., Mudge, S. R., Richard, C., Newman, S., Wittkop, B., Stahl, A., Friedt, W., Frisch, M., Gabur, I., Miller-Cooper, A., Campbell, B. C., Kelly, A. M., Fox, G., Christopher, J., Christopher, M. J., Chenu, K., Franckowiak, J., Mace, E. S., Borrell, A. K., Eagles, H., Jordan, D. R., Botella, J. R., Hammer, G., Godwin, I. D., Trevaskis, B., Snowdon, R. J. and Hickey, L. T. (2018) VERNALIZATION1 Modulates Root System Architecture in Wheat and Barley. Molecular Plant, 11 (1). pp. 226-229. https://doi.org/10.1016/j.molp.2017.10.005

Watson, A., Ghosh, S., Williams, M. J., Cuddy, W. S., Simmonds, J., Rey, M. D., Asyraf Md Hatta, M., Hinchliffe, A., Steed, A., Reynolds, D., Adamski, N. M., Breakspear, A., Korolev, A., Rayner, T., Dixon, L. E., Riaz, A., Martin, W., Ryan, M., Edwards, D., Batley, J., Raman, H., Carter, J., Rogers, C., Domoney, C., Moore, G., Harwood, W., Nicholson, P., Dieters, M. J., DeLacy, I. H., Zhou, J., Uauy, C., Boden, S. A., Park, R. F., Wulff, B. B. H. and Hickey, L. T. (2018) Speed breeding is a powerful tool to accelerate crop research and breeding. Nature Plants . pp. 1-7. https://doi.org/10.1038/s41477-017-0083-8

Watson, A., Ghosh, S., Williams, M. J., Cuddy, W. S., Simmonds, J., Rey, M. D., Asyraf Md Hatta, M., Hinchliffe, A., Steed, A., Reynolds, D., Adamski, N. M., Breakspear, A., Korolev, A., Rayner, T., Dixon, L. E., Riaz, A., Martin, W., Ryan, M., Edwards, D., Batley, J., Raman, H., Carter, J., Rogers, C., Domoney, C., Moore, G., Harwood, W., Nicholson, P., Dieters, M. J., DeLacy, I. H., Zhou, J., Uauy, C., Boden, S. A., Park, R. F., Wulff, B. B. H. and Hickey, L. T. (2018) Speed breeding is a powerful tool to accelerate crop research and breeding. Biorxiv . pp. 1-7. https://doi.org/10.1101/161182

2017

Al Washahi, L., Al Shamsi, H., Dillon, N. L., Sharma, N., Al Qamashoui, B. and Al Saadi, A. (2017) Molecular characterization of local mango (Mangifera indica L.) germplasm in Oman. Acta Horticulturae, 1183 . https://doi.org/10.17660/ActaHortic.2017.1183.15

Bally, I. S.E. and De Faveri, J. (2017) Breeding for low vigour in mango. Acta Horticulturae, 1183 . https://doi.org/10.17660/ActaHortic.2017.1183.9

Butler, J. B., Vaillancourt, R. E., Potts, B. M., Lee, D. J., King, G. J., Baten, A., Shepherd, M. and Freeman, J. S. (2017) Comparative genomics of Eucalyptus and Corymbia reveals low rates of genome structural rearrangement. BMC Genomics, 18 (1). https://doi.org/10.1186/s12864-017-3782-7

Clarke, S. J., McLean, J., George-Jaeggli, B., Eyre, J. and Rodriguez, D. (2017) Diversity in yield potential and yield stability among Australian commercial sorghum hybrids. In: TropAg 2017 International Tropical Agriculture Conference. High Impact Science to Nourish the world, 20-22 November 2017, Brisbane, Australia..

Clarke, S. J., McLean, J., George-Jaeggli, B., Eyre, J. and Rodriguez, D. (2017) Understanding the importance of matching sorghum hybrids and agronomy to site and seasonal conditions. In: Doing More with Less: Proceedings of the 18th Australian Agronomy Conference, 24-28 September 2017, Ballarat, VIC, Australia.

De Clerck, C., Crew, K. S., Van den houwe, I., McMichael, L., Berhal, C., Lassois, L., Haissam Jijakli, M., Roux, N., Thomas, J. E. and Massart, S. (2017) Lessons learned from the virus indexing of Musa germplasm: insights from a multiyear collaboration. Annals of Applied Biology, 171 (1). pp. 15-27. https://doi.org/10.1111/aab.12353

Hereward, J. P., Werth, J. A., Thornby, D. F., Keenan, M., Chauhan, B. S. and Walter, G. H. (2017) Complete chloroplast genome of glyphosate resistant Conyza bonariensis (L.) Cronquist from Australia. Mitochondrial DNA Part B, 2 (2). pp. 444-445. https://doi.org/10.1080/23802359.2017.1357441

Hickey, L. T., Germán, S. E., Pereyra, S. A., Diaz, J. E., Ziems, L. A., Fowler, R. A., Platz, G. J., Franckowiak, J. D. and Dieters, M. J. (2017) Speed breeding for multiple disease resistance in barley. Euphytica, 213 (3). p. 64. https://doi.org/10.1007/s10681-016-1803-2

Joshi, D. C., Singh, V., Hunt, C. H., Mace, E. S., van Oosterom, E., Sulman, R., Jordan, D. and Hammer, G. (2017) Development of a phenotyping platform for high throughput screening of nodal root angle in sorghum. Plant Methods, 13 (1). p. 56. https://doi.org/10.1186/s13007-017-0206-2

Kafle, D., Hänel, A., Lortzing, T., Steppuhn, A. and Wurst, S. (2017) Sequential above- and belowground herbivory modifies plant responses depending on herbivore identity. BMC Ecology, 17 (1). https://doi.org/10.1186/s12898-017-0115-2

Kuhn, D., Bally, I. S.E., Dillon, N. L., Innes, D. J., Groh, A., Rahaman, J., Sherman, A., Cohen, Y. and Ophir, R. (2017) Genetic map of mango: a tool for mango breeding. Frontiers in Plant Science, 8 (577). https://doi.org/10.3389/fpls.2017.00577

Marin-Felix, Y., Groenewald, J. Z., Cai, L., Chen, Q., Marincowitz, S., Barnes, I., Bensch, K., Braun, U., Camporesi, E., Damm, U., de Beer, Z. W., Dissanayake, A., Edwards, J., Giraldo, A., Hernández-Restrepo, M., Hyde, K. D., Jayawardena, R. S., Lombard, L., Luangsa-ard, J., McTaggart, A. R., Rossman, A. Y., Sandoval-Denis, M., Shen, M., Shivas, R. G., Tan, Y. P., van der Linde, E. J., Wingfield, M. J., Wood, A. R., Zhang, J. Q., Zhang, Y. and Crous, P. W. (2017) Genera of phytopathogenic fungi: GOPHY 1. Studies in Mycology, 86 . pp. 99-216. https://doi.org/10.1016/j.simyco.2017.04.002

Menamo, T.M., Bantte, K., Jordan, D., Mace, E. S., Hunt, C. H. and Borrell, A. K. (2017) Characterization of Ethiopian sorghum [Sorghum bicolor (L) Moench] germplasm collection for drought adaptation traits associated with roots. In: InterDrought-V, Hyderabad, India..

Neal, J. M., Ko, L., Gomez, A., De Faveri, J., Verbyla, A., Mayer, R. J. and Herrington, M. E. (2017) Testing strawberry genotypes for resistance to Colletotrichum gloeosporioides in Queensland. Acta Horticulturae, 1156 . pp. 743-750. https://doi.org/10.17660/ActaHortic.2017.1156.109

Nham, N. T., Macnish, A. J., Zakharov, F. and Mitcham, E. J. (2017) ‘Bartlett’ pear fruit ( Pyrus communis L.) ripening regulation by low temperatures involves genes associated with jasmonic acid, cold response, and transcription factors. Plant Science, 260 . pp. 8-18. https://doi.org/10.1016/j.plantsci.2017.03.008

Noble, T. J., Tao, Y., Mace, E. S., Williams, B., Jordan, D., Douglas, C. A. and Mundree, S. G. (2017) Characterization of linkage disequilibrium and population structure in a mungbean diversity panel. Frontiers in Plant Science, 8 , 2102.

Paul, J.-Y., Khanna, H., Kleidon, J., Hoang, P., Geijskes, J., Daniells, J. W., Zaplin, E., Rosenberg, Y., James, A., Mlalazi, B., Deo, P., Arinaitwe, G., Namanya, P., Becker, D., Tindamanyire, J., Tushemereirwe, W., Harding, R. and Dale, J. L. (2017) Golden bananas in the field: elevated fruit pro-vitamin A from the expression of a single banana transgene. Plant Biotechnology Journal, 15 (4). pp. 520-532. https://doi.org/10.1111/pbi.12650

Potgieter, A. B., George-Jaeggli, B., Chapman, S. C., Laws, K., Suárez Cadavid, L. A., Wixted, J., Watson, J., Eldridge, M., Jordan, D. R. and Hammer, G. L. (2017) Multi-Spectral Imaging from an Unmanned Aerial Vehicle Enables the Assessment of Seasonal Leaf Area Dynamics of Sorghum Breeding Lines. Frontiers in Plant Science, 8 (1532). https://doi.org/10.3389/fpls.2017.01532

Pretorius, L., Moyle, R. L., Dalton-Morgan, J., Schwinghamer, M. W., Crew, K. S., Schenk, P. M. and Geering, A. D. W. (2017) First fully sequenced genome of an Australian isolate of Cauliflower mosaic virus. Australasian Plant Pathology, 46 (6). pp. 597-599. https://doi.org/10.1007/s13313-017-0520-1

Ruas, M., Guignon, V., Sempere, G., Sardos, J., Hueber, Y., Duvergey, H., Andrieu, A., Chase, R., Jenny, C., Hazekamp, T., Irish, B., Jelali, K., Adeka, J., Ayala-Silva, T., Chao, C. P., Daniells, J. W., Dowiya, B., Effa effa, B., Gueco, L., Herradura, L., Ibobondji, L., Kempenaers, E., Kilangi, J., Muhangi, S., Ngo Xuan, P., Paofa, J., Pavis, C., Thiemele, D., Tossou, C., Sandoval, J., Sutanto, A., Vangu Paka, G., Yi, G., Van den houwe, I., Roux, N. and Rouard, M. (2017) MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. Database, 2017 (1). bax046-bax046. https://doi.org/10.1093/database/bax046

Sanewski, G. M., Ko, L., Innes, D. J., Kilian, A., Carling, J. and Song, J. (2017) DArTseq molecular markers for resistance to Phytophthora cinnamomi in pineapple (Ananas comosus L.). Australasian Plant Pathology, 46 (5). pp. 499-509. https://doi.org/10.1007/s13313-017-0512-1

Steinfort, U., Trevaskis, B., Fukai, S., Bell, K. L. and Dreccer, M. F. (2017) Vernalisation and photoperiod sensitivity in wheat: Impact on canopy development and yield components. Field Crops Research, 201 . pp. 108-121. https://doi.org/10.1016/j.fcr.2016.10.012

Tao, Y., Mace, E. S., Tai, S., Cruickshank, A., Campbell, B. C., Zhao, X., Van Oosterom, E. J., Godwin, I. D., Botella, J. R. and Jordan, D. R. (2017) Whole-Genome Analysis of Candidate genes Associated with Seed Size and Weight in Sorghum bicolor Reveals Signatures of Artificial Selection and Insights into Parallel Domestication in Cereal Crops. Frontiers in Plant Science, 8 . Article 1237. https://doi.org/10.3389/fpls.2017.01237

Vitelli, J. S., Tan, Y. P., Riding, N., Holdom, D. G., Chamberlain, A. and Shivas, R. G. (2017) First record of Ustilago sporoboli-indici in Australia. Australasian Plant Disease Notes, 12 (1). p. 52. https://doi.org/10.1007/s13314-017-0277-y

Ziems, L. A., Franckowiak, J. D., Platz, G. J., Mace, E. S., Park, R. F., Singh, D., Jordan, D. R. and Hickey, L. T. (2017) Investigating successive Australian barley breeding populations for stable resistance to leaf rust. Theoretical and Applied Genetics, 130 (11). pp. 2463-2477. https://doi.org/10.1007/s00122-017-2970-9

Ziems, L. A., Hickey, L. T., Platz, G. J., Franckowiak, J. D., Dracatos, P. M., Singh, D. and Park, R. F. (2017) Characterisation of Rph24: A gene conferring adult plant resistance to Puccinia hordei in barley. Phytopathology, 107 (7). pp. 834-841. https://doi.org/10.1094/PHYTO-08-16-0295-R

2016

Afonso, C. L., Amarasinghe, G. K., Bányai, K., Bào, Y., Basler, C. F., Bavari, S., Bejerman, N., Blasdell, K. R., Briand, F.-X., Briese, T., Bukreyev, A., Calisher, C. H., Chandran, K., Chéng, J., Clawson, A. N., Collins, P. L., Dietzgen, R. G., Dolnik, O., Domier, L. L., Dürrwald, R., Dye, J. M., Easton, A. J., Ebihara, H., Farkas, S. L., Freitas-Astúa, J., Formenty, P., Fouchier, R. A. M., Fù, Y., Ghedin, E., Goodin, M. M., Hewson, R., Horie, M., Hyndman, T. H., Jiāng, D., Kitajima, E. W., Kobinger, G. P., Kondo, H., Kurath, G., Lamb, R. A., Lenardon, S., Leroy, E. M., Li, C.-X., Lin, X.-D., Liú, L., Longdon, B., Marton, S., Maisner, A., Mühlberger, E., Netesov, S. V., Nowotny, N., Patterson, J. L., Payne, S. L., Paweska, J. T., Randall, R. E., Rima, B. K., Rota, P., Rubbenstroth, D., Schwemmle, M., Shi, M., Smither, S. J., Stenglein, M. D., Stone, D. M., Takada, A., Terregino, C., Tesh, R. B., Tian, J.-H., Tomonaga, K., Tordo, N., Towner, J. S., Vasilakis, N., Verbeek, M., Volchkov, V. E., Wahl-Jensen, V., Walsh, J. A., Walker, P. J., Wang, D., Wang, L.-F., Wetzel, T., Whitfield, A. E., Xiè, J., Yuen, K.-Y., Zhang, Y.-Z. and Kuhn, J. H. (2016) Taxonomy of the order Mononegavirales: update 2016. Archives of Virology . https://doi.org/10.1007/s00705-016-2880-1

Alam, M. M., van Oosterom, E. J., Cruickshank, A. W., Jordan, D. R. and Hammer, G. L. (2016) Predicting Tillering of Diverse Sorghum Germplasm across Environments. Crop Science . https://doi.org/10.2135/cropsci2016.04.0262

Bebawi, F. F., Campbell, S. D. and Mayer, R. J. (2016) Seed bank persistence and germination of chinee apple (Ziziphus mauritiana Lam.). The Rangeland Journal . https://doi.org/10.1071/RJ15104

Borgognone, M. G., Butler, D. G., Ogbonnaya, F. C. and Dreccer, M. F. (2016) Molecular Marker Information in the Analysis of Multi-Environment Trials Helps Differentiate Superior Genotypes from Promising Parents. Crop Science, 56 (5). pp. 2612-2628. https://doi.org/10.2135/cropsci2016.03.0151

Brewer, P. B., Yoneyama, K., Filardo, F. F., Meyers, E., Scaffidi, A., Frickey, T., Akiyama, K., Seto, Y., Dun, E. A., Cremer, J. E., Kerr, S. C., Waters, M. T., Flematti, G. R., Mason, M. G., Weiller, G., Yamaguchi, S., Nomura, T., Smith, S. M., Yoneyama, K. and Beveridge, C. A. (2016) LATERAL BRANCHING OXIDOREDUCTASE acts in the final stages of strigolactone biosynthesis inArabidopsis. Proceedings of the National Academy of Sciences . p. 201601729. https://doi.org/10.1073/pnas.1601729113

Butler, J. B., Freeman, J. S., Vaillancourt, R. E., Potts, B. M., Glen, M., Lee, D. J. and Pegg, G. S. (2016) Evidence for different QTL underlying the immune and hypersensitive responses of Eucalyptus globulus to the rust pathogen Puccinia psidii. Tree Genetics & Genomes, 12 (3). https://doi.org/10.1007/s11295-016-0987-x

Campbell, B. C., Gilding, E. K., Mace, E. S., Tai, S., Tao, Y., Prentis, P. J., Thomelin, P., Jordan, D. R. and Godwin, I. D. (2016) Domestication and the storage starch biosynthesis pathway: signatures of selection from a whole sorghum genome sequencing strategy. Plant Biotechnology Journal, 14 (12). pp. 2240-2253. https://doi.org/10.1111/pbi.12578

Chapman, S., Zheng, B. Y., Dreccer, M. F., Hammer, G. L., Jordan, D. and Chenu, K. (2016) Integration of crop models into breeding programs. In: International Crop Modelling Symposium, 15-17 March 2016, Berlin, Germany.

Christopher, J.T., Christopher, M. J., Borrell, A. K., Fletcher, S. and Chenu, K. (2016) Stay-green traits to improve wheat adaptation in well-watered and water-limited environments. Journal of Experimental Botany . https://doi.org/10.1093/jxb/erw276

Crous, P., Wingfield, M., Burgess, T., Hardy, G. S. J., Crane, C., Barrett, S., Cano-Lira, J., Le Roux, J., Thangavel, R., Guarro, J., Stchigel, A.M., Martín, M.P., Alfredo, D.S., Barber, P.A., Barreto, R.W., Baseia, I.G., Cano-Canals, J., Cheewangkoon, R., Ferreira, R.J., Gené, J., Lechat, C., Moreno, G., Roets, F., Shivas, R. G., Sousa, J.O., Tan, Y. P., Wiederhold, N.P., Abell, S.E., Accioly, T., Albizu, J.L., Alves, J.L., Antoniolli, Z.I., Aplin, N., Araújo, J., Arzanlou, M., Bezerra, J.D.P., Bouchara, J.-P., Carlavilla, J.R., Castillo, A., Castroagudín, V.L., Ceresini, P.C., Claridge, G.F., Coelho, G., Coimbra, V.R.M., Costa, L.A., da Cunha, K.C., da Silva, S.S., Daniel, R., de Beer, Z.W., Dueñas, M., Edwards, J., Enwistle, P., Fiuza, P.O., Fournier, J., García, D., Gibertoni, T.B., Giraud, S., Guevara-Suarez, M., Gusmão, L.F.P., Haituk, S., Heykoop, M., Hirooka, Y., Hofmann, T.A., Houbraken, J., Hughes, D.P., Kautmanová, I., Koppel, O., Koukol, O., Larsson, E., Latha, K.P.D., Lee, D.H., Lisboa, D.O., Lisboa, W.S., López-Villalba, Á., Maciel, J.L.N., Manimohan, P., Manjón, J.L., Marincowitz, S., Marney, T.S., Meijer, M., Miller, A.N., Olariaga, I., Paiva, L.M., Piepenbring, M., Poveda-Molero, J.C., Raj, K.N.A., Raja, H.A., Rougeron, A., Salcedo, I., Samadi, R., Santos, T.A.B., Scarlett, K., Seifert, K.A., Shuttleworth, L.A., Silva, G.A., Silva, M., Siqueira, J.P.Z., Souza-Motta, C.M., Stephenson, S.L., Sutton, D.A., Tamakeaw, N., Telleria, M.T., Valenzuela-Lopez, N., Viljoen, A., Visagie, C.M., Vizzini, A., Wartchow, F., Wingfield, B.D., Yurchenko, E., Zamora, J.C. and Groenewald, J.Z. (2016) Fungal Planet description sheets: 469–557. Persoonia-Molecular Phylogeny and Evolution of Fungi . https://doi.org/10.3767/003158516X694499

Daniells, J. W., Sachter-Smith, G. and Taylor, M. (2016) Bananas adrift in time – a case study in the Solomons. Acta Horticulturae (1114). pp. 27-32. https://doi.org/10.17660/ActaHortic.2016.1114.4

Dann, E. K., Coates, L. M., Pegg, K. G., Dean, J.R., Cooke, A.W., Smith, L., Shuey, L. S., Whiley, A.W., Hofman, P., Marques, R. and Stubbings, B. (2016) Rootstock selection, nitrogen and calcium influence postharvest disease in avocado. Acta Horticulturae (1120). pp. 391-398. https://doi.org/10.17660/ActaHortic.2016.1120.60

Dillon, N. L., Innes, D. J., Broadley, R. H., Varshney, R. K. and Bally, I. S.E. (2016) The Queensland Mango Genomics Initiative. In: Plant & Animal Genome Conference XXIV, San Diego.

Dillon, N. L., Innes, D. J., Ming, Y., Fang, X., Li, X., Gao, X., Zhan, R. L., Hong Xia, W., Bajaj, P., Bally, I. S.E., Kumar, A. and Varshney, R. K. (2016) Drafting the Kensington Pride Mango Genome. In: Plant & Animal Genome Conference XXIV, 9-13 January 2016, San Diego, California, USA.

Ferrante, A., George-Jaeggli, B., McLean, J., Eyre, J., deVoil, P. and Rodriguez, D. (2016) Matching sorghum genotypes and management across growing environments and expected seasonal conditions. In: 7th International Crop Science Congress, Bejing, China.

Galyuon, I. K., Madhusudhana, R., Borrell, A. K., Hash, T. C. and Howarth, C. J. (2016) Genetic diversity of stay-green sorghums and their derivatives revealed by microsatellites. African Journal of Biotechnology, 15 (25). pp. 1363-1374. https://doi.org/10.5897/AJB2015.15074

George-Jaeggli, B., Potgieter, A., Chapman, S., Holland, E., Laws, K., Eldridge, M., Watson, J., Armstrong, R., Bouteillé-Pallas, M., Wixted, J., Cruickshank, A., Furbank, R. T., Von Caemmerer, S. and Jordan, D. (2016) Using remote-sensing technologies to find genetic variation in photosynthetic capacity in sorghum. In: C4 Photosynthesis - 50 years of discovery and innovation, QT Hotel Conference Centre, Canberrra, Australia.

Gonzalez-Cendales, Y., Catanzariti, A.-M., Baker, B., McGrath, D. J. and Jones, D. A. (2016) Identification of I-7 expands the repertoire of genes for resistance to Fusarium wilt in tomato to three resistance gene classes. Molecular Plant Pathology, 17 (3). pp. 448-463. https://doi.org/10.1111/mpp.12294

Gorny, A. M., Kikkert, J. R., Shivas, R. G. and Pethybridge, S. J. (2016) First report of Didymella americanaon baby lima bean (Phaseolus lunatus). Canadian Journal of Plant Pathology, 38 (3). pp. 389-394. https://doi.org/10.1080/07060661.2016.1195877

Hammer, G. L., Chapman, S., Van Oosterom, E.J., Borrell, A., McLean, G. and Jordan, D. (2016) Integrating crop physiology and modelling with genetic improvement. In: International Crop Modelling Symposium, 15-17 March 2016, Berlin, Germany.

Hammer, G., McLean, G., Doherty, A., van Oosterom, E. and Chapman, S. (2016) Sorghum Crop Modeling and Its Utility in Agronomy and Breeding. In: Sorghum: State of the Art and Future Perspectives. Agronomy Monographs (58). American Society of Agronomy and Crop Science Society of America, Inc., Madison, WI. https://doi.org/10.2134/agronmonogr58.2014.0064

Hammer, G., Messina, C., van Oosterom, E., Chapman, S., Singh, V., Borrell, A., Jordan, D. and Cooper, M. (2016) Molecular Breeding for Complex Adaptive Traits: How Integrating Crop Ecophysiology and Modelling Can Enhance Efficiency. In: Crop Systems Biology. Springer International Publishing. https://doi.org/10.1007/978-3-319-20562-5_7

Henderson, C., Dennien, S., Langenbaker, R., Coleman, E., Prichard, M., Brown, P., Best, T. and Villordon, A. Q. (2016) Innovating a new cultivar in partnership with the Australian sweetpotato industry: Agronomic adaptation issues. Acta Horticulturae, 1118 . pp. 25-30. https://doi.org/10.17660/ActaHortic.2016.1118.4

Hereward, J. P., Werth, J. A., Thornby, D. F., Keenan, M., Chauhan, B. S. and Walter, G. H. (2016) Complete chloroplast genome sequences of six lines of Echinochloa colona (L.) link. Mitochondrial DNA Part B, 1 (1). pp. 945-946. https://doi.org/10.1080/23802359.2016.1261612

Hereward, J. P., Werth, J. A., Thornby, D. F., Keenan, M., Chauhan, B. S. and Walter, G. H. (2016) Complete chloroplast genome sequences of two species of Chloris grass, Chloris truncata Sw. and Chloris virgata R.Br. Mitochondrial DNA Part B, 1 (1). pp. 960-961. https://doi.org/10.1080/23802359.2016.1266705

Herrington, M. E., Hardner, C. M., Wegener, M., Woolcock, L. L. and Dieters, M. J. (2016) Breeding objective for strawberry in subtropical southeast Queensland. Acta Horticulturae, 1127 . pp. 203-210. https://doi.org/10.17660/ActaHortic.2016.1127.32

Herrington, M.E., Wegener, M., Hardner, C., Woolcock, L.L. and Dieters, M.J. (2016) Estimating production costs and profitability of strawberry genotypes in southeast Queensland using plant traits. Acta Horticulturae (1117). pp. 303-308. https://doi.org/10.17660/ActaHortic.2016.1117.49

Hung, T. D., Brawner, J. T., Lee, D. J., Meder, R. and Dieters, M. J. (2016) Genetic variation in growth and wood-quality traits of Corymbia citriodora subsp. variegata across three sites in south-east Queensland, Australia. Southern Forests . pp. 1-15. https://doi.org/10.2989/20702620.2016.1183095

Innes, D. J. (2016) Mangoes Made in Australia. Project Report. State of Queensland.

Joshi, D., Singh, V., van Oosterom, E., Mace, E. S., Jordan, D. R. and Hammer, G. (2016) Genetic Manipulation of Root System Architecture to Improve Drought Adaptation in Sorghum. In: The Sorghum Genome. Springer. https://doi.org/10.1007/978-3-319-47789-3_11

Khemmuk, W., Geering, A. D. W. and Shivas, R. G. (2016) Wongia gen. nov. (Papulosaceae, Sordariomycetes), a new generic name for two root-infecting fungi from Australia. IMA Fungus, 7 (2). pp. 247-252. https://doi.org/10.5598/imafungus.2016.07.02.04

Kilian, A., Sanewski, G. M. and Ko, L. (2016) The application of DArTseq technology to pineapple. Acta Horticulturae, 1111 . pp. 181-188.

Kuhn, D. N., Dillon, N. L., Innes, D. J., Wu, L. S. and Mockaitis, K. (2016) Development of single nucleotide polymorphism (SNP) markers from the mango (Mangifera indica) transcriptome for mapping and estimation of genetic diversity. Acta Horticulturae, 1111 . pp. 315-322. https://doi.org/10.17660/ActaHortic.2016.1111.45

Lane, V., Hvoslef-Eide, A. K., Drew, R. A., Knight, J. G. and Panis, B. (2016) Exploitation and progress of GMOs past, present and future: Exciting opportunities or a dead end? Acta Horticulturae, 1124 . pp. 101-114. https://doi.org/10.17660/ActaHortic.2016.1124.15

Li, P., Mace, E. S., Guo, Y., Han, L., Wang, M., He, Y., Chen, J., Yuyama, N., Jordan, D. R. and Cai, H. (2016) Fine Mapping of qDor7, a Major QTL Affecting Seed Dormancy in Sorghum (Sorghum bicolor (L.) Moench). Tropical Plant Biology . https://doi.org/10.1007/s12042-016-9169-0

Luo, H., Zhao, W., Wang, Y., Xia, Y., Wu, X., Zhang, L., Tang, B., Zhu, J., Fang, L., Du, Z., Bekele, W. A., Tai, S., Jordan, D. R., Godwin, I. D., Snowdon, R. J., Mace, E. S., Luo, J. and Jing, H. C. (2016) Erratum: SorGSD: a sorghum genome SNP database (Biotechnology for Biofuels (2016) 9:6 DOI: 10.1186/s13068-015-0415-8). Biotechnology for Biofuels, 9 (1). https://doi.org/10.1186/s13068-016-0450-0

Luo, H., Zhao, W., Wang, Y., Xia, Y., Wu, X., Zhang, L., Tang, B., Zhu, J., Fang, L., Du, Z., Bekele, W. A., Tai, S., Jordan, D. R., Godwin, I. D., Snowdon, R. J., Mace, E. S., Jing, H.-C. and Luo, J. (2016) SorGSD: a sorghum genome SNP database. Biotechnology for Biofuels, 9 (1). pp. 1-9. https://doi.org/10.1186/s13068-015-0415-8

McFarlane, D., Ridley, A. W., Aitken, E. and Walter, G. (2016) The role of fungi and their associated volatiles in the ecology of Tribolium castaneum. In: Science Exchange 2016, 25-28 October 2016, Creswick, Victoria.

McTaggart, A. R., van der Nest, M. A., Steenkamp, E. T., Roux, J., Slippers, B., Shuey, L. S., Wingfield, M. J. and Drenth, A. (2016) Fungal Genomics Challenges the Dogma of Name-Based Biosecurity. PLoS Pathogens, 12 (5). https://doi.org/10.1371/journal.ppat.1005475

McTaggart, A. R., Shivas, R. G., Boekhout, T., Oberwinkler, F., Vánky, K., Pennycook, S. R. and Begerow, D. (2016) Mycosarcoma (Ustilaginaceae), a resurrected generic name for corn smut (Ustilago maydis) and its close relatives with hypertrophied, tubular sori. IMA Fungus, 7 (2). pp. 309-315. https://doi.org/10.1002/ps.446810.5598/imafungus.2016.07.02.10

McTaggart, A. R., Shivas, R. G., Doungsa-ard, C., Weese, T. L., Beasley, D. R., Hall, B. H., Metcalf, D. A. and Geering, A. D. W. (2016) Identification of rust fungi (Pucciniales) on species of Allium in Australia. Australasian Plant Pathology, 45 (6). pp. 581-592. https://doi.org/10.1007/s13313-016-0445-0

McTaggart, A. R., Shivas, R. G., van der Nest, M. A., Roux, J., Wingfield, B. D. and Wingfield, M. J. (2016) Host jumps shaped the diversity of extant rust fungi (Pucciniales). New Phytologist, 209 (3). pp. 1149-1158. https://doi.org/10.1111/nph.13686

Meyer, F. E., Shuey, L. S., Naidoo, S., Mamni, T., Berger, D. K., Myburg, A. A., van den Berg, N. and Naidoo, S. (2016) Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility. Frontiers in Plant Science, 7 (191). https://doi.org/10.3389/fpls.2016.00191

Mindaye, T. T., Mace, E. S., Godwin, I. D. and Jordan, D. R. (2016) Heterosis in locally adapted sorghum genotypes and potential of hybrids for increased productivity in contrasting environments in Ethiopia. The Crop Journal, 4 (6). pp. 479-489. https://doi.org/10.1016/j.cj.2016.06.020

Mohn Nor, N.H., Fujinuma, R., Menzies, N.W., Harper, S. and McGrath, D. (2016) Selection for root morphological traits improves the growth of grafted bell pepper. Acta Horticulturae, 1127 . https://doi.org/10.17660/ActaHortic.2016.1127.33

Moyle, R., Pretorius, L.-S., Dalton-Morgan, J., Persley, D. M. and Schenk, P. (2016) Analysis of the first complete genome sequence of an Australian tomato spotted wilt virus isolate. Australasian Plant Pathology, 45 (5). pp. 509-512. https://doi.org/10.1007/s13313-016-0435-2

O’Brien, C., Parisi, A., Lim Yiing Yuan, J., Constantin, M. and Mitter, N. (2016) Cryopreservation of avocado (Persea Americana Mill.) using somatic embryos. Acta Horticulturae (1113). pp. 265-270. https://doi.org/10.17660/ActaHortic.2016.1113.39

Parkes, H. A., Tabing, O., McClymont, L., Wilkie, J. D. and Combret, M. (2016) Variation in the flowering phenology of apple and pear in Australia. Acta Horticulturae, 1130 . pp. 55-62. https://doi.org/10.17660/ActaHortic.2016.1130.8

Parkinson, L. E., Shivas, R. G. and Dann, E. K. (2016) Novel species of Gliocladiopsis (Nectriaceae, Hypocreales, Ascomycota) from avocado roots (Persea americana) in Australia. Mycoscience . https://doi.org/10.1016/j.myc.2016.10.004

Paynter, M. L., Czislowski, E., Herrington, M. E. and Aitken, E. A.B. (2016) Differences in Pathogenicity, Genetic Variability and Cultivar Responses among Isolates of Fusarium oxysporum from Strawberry in Australia. Journal of the American Society for Horticultural Science, 141 (6). pp. 645-652. https://doi.org/10.21273/jashs03888-16

Paynter, M. L. and Herrington, M.E. (2016) Development of a glasshouse bioassay suitable for evaluating Fusarium wilt resistance in strawberry. Acta Horticulturae, 1127 . https://doi.org/10.17660/ActaHortic.2016.1127.21

Potgieter, A., Watson, J., Jordan, D., Hammer, G., Chapman, S., Laws, K., McLean, G., George-Jaeggli, B., Holland, E. and Eldridge, M. (2016) Field phenotyping of sorghum breeding plots through proximal sensing. In: 5th International Controlled Environment Conference (AusPheno 2016), September 2016.

Rajandran, V. (2016) Genetic control of flowering time in lentil. PhD thesis, University Of Tasmania. https://doi.org/10.25959/23239094.v1

Randall, B. W., Walton, D. A., Lee, D. J. and Wallace, H. M. (2016) The risk of pollen-mediated gene flow into a vulnerable eucalypt species. Forest Ecology and Management, 381 . pp. 297-304. https://doi.org/10.1016/j.foreco.2016.09.042

Rich, S. M., Wasson, A. P., Richards, R. A., Katore, T., Prashar, R., Chowdhary, R., Saxena, D. C., Mamrutha, H. M., Zwart, A., Misra, S. C., Prasad, S. V. S., Chatrath, R., Christopher, J. and Watt, M. (2016) Wheats developed for high yield on stored soil moisture have deep vigorous root systems. Functional Plant Biology, 43 (2). pp. 173-188.

Rodda, M. S., Hobson, K. B., Forknall, C. R., Daniel, R. P., Fanning, J. P., Pounsett, D. D., Simpfendorfer, S., Moore, K. J., Owen, K. J., Sheedy, J. G., Thompson, J. P., Hollaway, G. J. and Slater, A. T. (2016) Highly heritable resistance to root-lesion nematode (Pratylenchus thornei) in Australian chickpea germplasm observed using an optimised glasshouse method and multi-environment trial analysis. Australasian Plant Pathology . https://doi.org/10.1007/s13313-016-0409-4

Russell, D. M., Neal, J. M., Mayer, R. J., Bell, D. and Topp, B. (2016) Variation of cutting rooting ability in cultivated and wild species of Macadamia. Acta Horticulturae, 1109 . pp. 197-202. https://doi.org/10.17660/ActaHortic.2016.1109.32

Sharman, M., Kehoe, M., Coutts, B., van Leur, J., Filardo, F. F. and Thomas, J. (2016) Two Complete Genome Sequences of Phasey Bean Mild Yellows Virus, a Novel Member of the Luteoviridae from Australia. Genome Announcements, 4 (1). e01569-15. https://doi.org/10.1128/genomeA.01569-15

Shivas, R. G., Tan, Y. P., Edwards, J., Dinh, Q., Maxwell, A., Andjic, V., Liberato, J. R., Anderson, C., Beasley, D. R., Bransgrove, K., Coates, L. M., Cowan, K., Daniel, R., Dean, J. R., Lomavatu, M. F., Mercado-Escueta, D., Mitchell, R. W., Thangavel, R., Tran-Nguyen, L. T. T. and Weir, B. S. (2016) Colletotrichum species in Australia. Australasian Plant Pathology, 45 (5). pp. 447-464. https://doi.org/10.1007/s13313-016-0443-2

Smith, M. W. (2016) Commercial development of subtropical mandarin hybrids. Project Report. Horticulture Innovation Australia.

Smith, M. W., Gultzow, D. L., Newman, T. K., Parfitt, S. C. and Miles, A. K. (2016) A co-inoculation technique to rapidly screen citrus hybrids for resistance to both Alternaria Brown Spot caused by Alternaria alternata and Citrus Scab caused by Elsinoe fawcettii. Citrus Research and Technology, 37 . pp. 82-87.

Smith, M. W., Newman, T. K., Gultzow, D. L., Parfitt, S. C. and Barkley, P. (2016) Citrus tristeza virus replication and movement in seedlings of 71 rootstock genotypes. Citrus Research and Technology, 37 . pp. 156-164. https://doi.org/10.4322/crt.ICC041

Spagnolli, F. C., Mace, E. S., Jordan, D., Borrás, L. and Gambin, B. L. (2016) Quantitative Trait Loci of Plant Attributes Related to Sorghum Grain Number Determination. Crop Science, 56 (6). pp. 3046-3054. https://doi.org/10.2135/cropsci2016.03.0185

Sutano, A., Edison, H.S., Hermanto, C., Nasution, F., Cizkova, J., Hribove, E., Dolezel, J., Roux, N., Horry, J.P., Daniells, J. W. and De Langhe, E. (2016) Collecting banana diversity in eastern Indonesia. Acta Horticulturae, 1114 . pp. 19-26. https://doi.org/10.17660/ActaHortic.2016.1114.3

Tan, Y. P., Crous, P. W. and Shivas, R. G. (2016) Eight novel Bipolaris species identified from John L. Alcorn’s collections at the Queensland Plant Pathology Herbarium (BRIP). Mycological Progress, 15 (10-11). pp. 1203-1214. https://doi.org/10.1007/s11557-016-1240-6

Topp, B., Hardner, C. M., Neal, J. M., Kelly, A. M., Russell, D., McConchie, C. and O'Hare, P. (2016) Overview of the Australian macadamia industry breeding program. Acta Horticulturae, 1127 . pp. 45-50. https://doi.org/10.17660/ActaHortic.2016.1127.8

Turner, D.W., Fortescue, J.A. and Daniells, J. W. (2016) Banana agronomy – can unravelling the Musa genome help? Acta Horticulturae (1114). pp. 245-260. https://doi.org/10.17660/ActaHortic.2016.1114.34

Vawdrey, L. (2016) Effect of curative and protective pre-harvest fungicide and postharvest hot water applications on decay of papaya. Project Report. Horticulture Innovation Australia.

Wei, L., Jian, H., Lu, K., Filardo, F. F., Yin, N., Liu, L., Qu, C., Li, W., Du, H. and Li, J. (2016) Genome-wide association analysis and differential expression analysis of resistance to Sclerotinia stem rot in Brassica napus. Plant Biotechnology Journal, 14 (6). pp. 1368-1380. https://doi.org/10.1111/pbi.12501

White, B., Day, C., Christopher, M. J. and van Klinken, R. (2016) Should we invest now in cereal pre-breeding for biosecurity threats. Technical Report. University of Western Australia.

2015

Borrell, A. and George-Jaeggli, B. (2015) Stay-green Drought Adaptation Trait Enhances Sorghum Production in Sub-tropical Australia, Central-Western India and Sub-Saharan Africa. In: Tropical Agriculture Conference, Brisbane Convention & Exhibition Centre.

Brewbaker, J. L. and Martin, I. (2015) Breeding Tropical Vegetable Corns. Plant Breeding Reviews, 39 . pp. 125-198. https://doi.org/10.1002/9781119107743.ch04

Chen, Z., Schlipalius, D., Opit, G., Subramanyam, B. and Phillips, T. W. (2015) Diagnostic Molecular Markers for Phosphine Resistance in U.S. Populations of Tribolium castaneum and Rhyzopertha dominica. PLoS ONE, 10 (3). e0121343. https://doi.org/10.1371/journal.pone.0121343

Coates, L. M. (2015) Plant health biosecurity, risk management and capacity building for the nursery industry. Project Report. Hort Innovation.

Crous, P. W., Wingfield, M. J., Roux, J. J. L., Richardson, D. M., Strasberg, D., Shivas, R. G., Alvarado, P., Edwards, J., Moreno, G., Sharma, R., Sonawane, M. S., Tan, Y. P., Altés, A., Barasubiye, T., Barnes, C. W., Blanchette, R. A., Boertmann, D., Bogo, A., Carlavilla, J. R., Cheewangkoon, R., Daniel, R., de Beer, Z. W., Yáñez-Morales, M. d. J., Duong, T. A., Fernández-Vicente, J., Geering, A. D. W., Guest, D. I., Held, B. W., Heykoop, M., Hubka, V., Ismail, A. M., Kajale, S. C., Khemmuk, W., Ik, M., Kurli, R., Lebeuf, R., Lévesque, C. A., Lombard, L., Magista, D., Manjón, J. L., Marincowitz, S., Mohedano, J. M., Nováková, A., Oberlies, N. H., Otto, E. C., Paguigan, N. D., Pascoe, I. G., Pérez-Butrón, J. L., Perrone, G., Rahi, P., Raja, H. A., Rintoul, T., Sanhueza, R. M. V., Scarlett, K., Shouche, Y. S., Shuttleworth, L. A., Taylor, P. W. J., Thorn, R. G., Vawdrey, L. L., Solano-Vidal, R., Voitk, A., Wong, P. T. W., Wood, A. R., Zamora, J. C. and Groenewald, J. Z. (2015) Fungal Planet description sheets: 371-399. Persoonia - Molecular Phylogeny and Evolution of Fungi, 35 (1). pp. 264-327. https://doi.org/10.3767/003158515X690269

Crous, P., Wingfield, M. J., Guarro, J., Hernández-Restrepo, M., Sutton, D., Acharya, K., Barber, P., Boekhout, T., Dimitrov, R. A., Dueñas, M., Dutta, A. K., Gené, J., Gouliamova, D., Groenewald, M., Lombard, L., Morozova, O., Sarkar, J., Smith, M., Stchigel, A. M., Groenewald, J. Z. and Shivas, R. G. (2015) Fungal Planet description sheets: 320–370. Persoonia - Molecular Phylogeny and Evolution of Fungi, 34 . pp. 167-266.

Dietzgen, R. G., Innes, D. J. and Bejerman, N. (2015) Complete genome sequence and intracellular protein localization of Datura yellow vein nucleorhabdovirus. Virus Research, 205 . pp. 7-11. https://doi.org/10.1016/j.virusres.2015.05.001

Han, L., Chen, J., Mace, E. S., Liu, Y., Zhu, M., Yuyama, N., Jordan, D. R. and Cai, H. (2015) Fine mapping of qGW1, a major QTL for grain weight in sorghum. Theoretical and Applied Genetics . pp. 1-13. https://doi.org/10.1007/s00122-015-2549-2

Hoang, V. L. T., Innes, D. J., Shaw, P. N., Monteith, G. R., Gidley, M. J. and Dietzgen, R. G. (2015) Sequence diversity and differential expression of major phenylpropanoid-flavonoid biosynthetic genes among three mango varieties. BMC Genomics, 16 (1). https://doi.org/10.1186/s12864-015-1784-x

Hoskin, M.L., Hutchison, M., Barnes, A.C., Ovenden, J.R. and Pope, L.C. (2015) Parental contribution to progeny during experimental spawning of jungle perch, Kuhlia rupestris. Marine and Freshwater Research, 66 (4). p. 375. https://doi.org/10.1071/mf13313

Hung, T. D., Brawner, J. T., Meder, R., Lee, D. J., Southerton, S., Thinh, H. H. and Dieters, M. J. (2015) Estimates of genetic parameters for growth and wood properties in Eucalyptus pellita F. Muell. to support tree breeding in Vietnam. Annals of Forest Science, 72 (2). pp. 205-217. https://doi.org/10.1007/s13595-014-0426-9

Innes, D. J., Dillon, N. L., Smyth, H., Karan, M., Holton, T. A., Bally, I. S.E. and Dietzgen, R. G. (2015) Mangomics: Information Systems Supporting Advanced Mango Breeding. In: Genomics and Proteomics. Apple Academic Press. https://doi.org/10.1201/b18597-12

Kaur, R., Subbarayalu, M., Jagadeesan, R., Daglish, G. J., Nayak, M. K., Naik, H.R., Ramasamy, S., Subramanian, C., Ebert, P. R. and Schlipalius, D. I. (2015) Phosphine resistance in India is characterised by a dihydrolipoamide dehydrogenase variant that is otherwise unobserved in eukaryotes. Heredity, 115 (3). pp. 188-194. https://doi.org/10.1038/hdy.2015.24

Kraberger, S., Kumari, S. G., Hamed, A. A., Gronenborn, B., Thomas, J. E., Sharman, M., Harkins, G. W., Muhire, B. M., Martin, D. P. and Varsani, A. (2015) Molecular diversity of Chickpea chlorotic dwarf virus in Sudan: High rates of intra-species recombination – a driving force in the emergence of new strains. Infection, Genetics and Evolution, 29 . pp. 203-215. https://doi.org/10.1016/j.meegid.2014.11.024

Mace, E. S. (2015) Component ET8: Pedigree-based genome mapping for marker-assisted selection and recurrent parent recovery in wheat and barley. Project Report. Grains Research & Development Corporation.

Mann, K. S., Johnson, K. N. and Dietzgen, R. G. (2015) Cytorhabdovirus phosphoprotein shows RNA silencing suppressor activity in plants, but not in insect cells. Virology, 476 . p. 413. https://doi.org/10.1016/j.virol.2014.12.023

Martin, A., Bovill, W. D., Percy, C. D., Herde, D., Fletcher, S., Kelly, A. M., Neate, S. M. and Sutherland, M. W. (2015) Markers for seedling and adult plant crown rot resistance in four partially resistant bread wheat sources. Theoretical and Applied Genetics, 128 (3). pp. 377-385. https://doi.org/10.1007/s00122-014-2437-1

McTaggart, A. R., Shuey, L. S., McKenna, S. G., Davis, R. I. and Shivas, R. G. (2015) Plasmopara sphagneticolae sp. nov. (Peronosporales) on Sphagneticola (Asteraceae) in Australia. Australasian Plant Pathology, 44 (1). pp. 81-85. https://doi.org/10.1007/s13313-014-0323-6

Miles, A. K., Newman, T. K., Gultzow, D. L., Parfitt, S. C., Drenth, A. and Smith, M. W. (2015) Commercial-scale Alternaria brown spot resistance screening as the first step in breeding new mandarins for Australia. Acta Horticulturae, 1065 . pp. 971-978.

Mindaye, T. T., Mace, E. S., Godwin, I. D. and Jordan, D. R. (2015) Genetic differentiation analysis for the identification of complementary parental pools for sorghum hybrid breeding in Ethiopia. Theoretical and Applied Genetics . pp. 1-11. https://doi.org/10.1007/s00122-015-2545-6

Nahrung, H. F. and Swain, A. J. (2015) Strangers in a strange land: do life history traits differ for alien and native colonisers of novel environments? Biological Invasions, 17 (2). pp. 699-709. https://doi.org/10.1007/s10530-014-0761-7

Nguyen, T. T., Collins, P. J. and Ebert, P. R. (2015) Inheritance and Characterization of Strong Resistance to Phosphine in Sitophilus oryzae(L.). PLoS ONE, 10 (4). e0124335. https://doi.org/10.1371/journal.pone.0124335

O'Connor, K. M., Powell, M., Nock, C. and Shapcott, A. (2015) Crop to wild gene flow and genetic diversity in a vulnerable Macadamia (Proteaceae) species in New South Wales, Australia. Biological Conservation, 191 . pp. 504-511. https://doi.org/10.1016/j.biocon.2015.08.001

Richard, C., Hickey, L., Fletcher, S., Chenu, K., Borrell, A. and Christopher, J. (2015) High-throughput Phenotyping of Wheat Seminal Root Traits in a Breeding Context. Procedia Environmental Sciences, 29 . pp. 102-103. https://doi.org/10.1016/j.proenv.2015.07.179

Richard, C. A. I., Hickey, L. T., Fletcher, S., Jennings, R., Chenu, K. and Christopher, J. T. (2015) High-throughput phenotyping of seminal root traits in wheat. Plant Methods, 11 , 13. pp. 1-11. https://doi.org/10.1186/s13007-015-0055-9

Ridge, S., Brown, P. H., Hecht, V., Driessen, R. G. and Weller, J. L. (2015) The role of BoFLC2 in cauliflower (Brassica oleracea var. botrytis L.) reproductive development. Journal of Experimental Botany, 66 (1). p. 125. https://doi.org/10.1093/jxb/eru408

Shapcott, A., Lamont, R. W., O'Connor, K. M., James, H. and Conroy, G. C. (2015) Population genetics of Philotheca sporadica (Rutaceae) to advise an offset translocation program. Conservation Genetics, 16 (3). pp. 687-702. https://doi.org/10.1007/s10592-014-0693-x

Singh, V., Nguyen, C. T., van Oosterom, E. J., Chapman, S. C., Jordan, D. R. and Hammer, G. L. (2015) Sorghum genotypes differ in high temperature responses for seed set. Field Crops Research, 171 . pp. 32-40. https://doi.org/10.1016/j.fcr.2014.11.003

Thines, M., Telle, S., Choi, Y.-J., Tan, Y. P. and Shivas, R. G. (2015) Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews. IMA Fungus, 6 (2). pp. 483-491. https://doi.org/10.5598/imafungus.2015.06.02.12

Wang, X., Mace, E. S., Platz, G. J., Hunt, C. H., Hickey, L. T., Franckowiak, J. D. and Jordan, D. R. (2015) Spot form of net blotch resistance in barley is under complex genetic control. Theoretical and Applied Genetics, 128 (3). p. 489. https://doi.org/10.1007/s00122-014-2447-z

White, J. A., Ryley, M. J., George, D. L. and Kong, G. A. (2015) Identification of pathotypes of the sorghum rust pathogen, Puccinia purpurea, in Australia. Australasian Plant Pathology, 44 (1). p. 1. https://doi.org/10.1007/s13313-014-0318-3

Widana Gamage, S., Persley, D. M., Higgins, C. M. and Dietzgen, R. G. (2015) First complete genome sequence of a capsicum chlorosis tospovirus isolate from Australia with an unusually large S RNA intergenic region. Archives of Virology, 160 (3). pp. 869-872. https://doi.org/10.1007/s00705-014-2324-8

Yasaka, R., Ohba, K., Schwinghamer, M. W., Fletcher, J., Ochoa-Corona, F. M., Thomas, J. E., Ho, S. Y. W., Gibbs, A. J. and Ohshima, K. (2015) Phylodynamic evidence of the migration of turnip mosaic potyvirus from Europe to Australia and New Zealand. Journal of General Virology, 96 (Pt_3). p. 701. https://doi.org/10.1099/jgv.0.000007

Zeppa, A. (2015) Transforming tenderness and eating quality in tropical sweetcorn through introgression of tender germplasm. Project Report. Horticulture Australia Limited:.

2014

Alam, M. M., Hammer, G. L., van Oosterom, E. J., Cruickshank, A. W., Hunt, C. H. and Jordan, D. R. (2014) A physiological framework to explain genetic and environmental regulation of tillering in sorghum. New Phytologist, 203 (1). pp. 155-167. https://doi.org/10.1111/nph.12767

Alam, M. M., Mace, E. S., van Oosterom, E. J., Cruickshank, A. W., Hunt, C. H., Hammer, G. L. and Jordan, D. R. (2014) QTL analysis in multiple sorghum populations facilitates the dissection of the genetic and physiological control of tillering. Theoretical and Applied Genetics, 127 (10). pp. 2253-2266. https://doi.org/10.1007/s00122-014-2377-9

Ariyawansa, H. A., Hawksworth, D. L., Hyde, K. D., Jones, E. B. G., Maharachchikumbura, S. S. N., Manamgoda, D. S., Thambugala, K. M., Udayanga, D., Camporesi, E., Daranagama, A., Jayawardena, R., Liu, J.-K., McKenzie, E. H. C., Phookamsak, R., Senanayake, I. C., Shivas, R. G., Tian, Q. and Xu, J.-C. (2014) Epitypification and neotypification: guidelines with appropriate and inappropriate examples. Fungal Diversity, 69 (1). pp. 57-91. https://doi.org/10.1007/s13225-014-0315-4

Bally, I. S.E., Dillon, N. L., Grice, K. R.E. and Maddox, C. (2014) Mango Breeding Support. Project Report. Horticulture Australia.

Barwick, S.A., Johnston, D.J., Holroyd, R.G., Walkley, J.R.W. and Burrow, H.M. (2014) Multi-trait assessment of early-in-life female, male and genomic measures for use in genetic selection to improve female reproductive performance of Brahman cattle. Animal Production Science, 54 (1). pp. 97-109. https://doi.org/10.1071/an13134

Christopher, M. J. (2014) Australian Winter Cereals Molecular Marker Program - Component: Implementation/Validation of Molecular Markers EGA - DPI Node. Project Report. Grains Research & Development Corporation.

Christopher, J. T., Veyradier, M., Borrell, A. K., Harvey, G. L., Fletcher, S. and Chenu, K. (2014) Phenotyping novel stay-green traits to capture genetic variation in senescence dynamics. Functional Plant Biology, 41 (11). pp. 1035-1048. https://doi.org/10.1071/FP14052

Cremer, J. E., Bean, S.R., Tilley, M.M., Ioerger, B.P., Ohm, J.B., Kaufman, R.C., Wilson, J.D., Innes, D. J., Gilding, E. K. and Godwin, I. D. (2014) Grain sorghum proteomics: integrated approach toward characterization of endosperm storage proteins in kafirin allelic variants. J Agric Food Chem, 62 (40). pp. 9819-9831. https://doi.org/10.1021/jf5022847

Cremer, J. E., Liu, L., Bean, S. R., Ohm, J.‐B., Tilley, M., Wilson, J. D., Kaufman, R. C., Vu, T. H., Gilding, E. K., Godwin, I. D. and Wang, D. (2014) Impacts of Kafirin Allelic Diversity, Starch Content, and Protein Digestibility on Ethanol Conversion Efficiency in Grain Sorghum. Cereal Chemistry, 91 (3). pp. 218-227. https://doi.org/10.1094/CCHEM-04-13-0068-R

Crous, P. W., Shivas, R. G., Quaedvlieg, W., van der Bank, M., Zhang, Y., Summerell, B. A., Guarro, J., Wingfield, M. J., Wood, A. R., Alfenas, A. C., Braun, U., Cano-Lira, J. F., García, D., Marin-Felix, Y., Alvarado, P., Andrade, J. P., Armengol, J., Assefa, A., den Breeÿen, A., Camele, I., Cheewangkoon, R., De Souza, J. T., Duong, T. A., Esteve-Raventós, F., Fournier, J., Frisullo, S., García-Jiménez, J., Gardiennet, A., Gené, J., Hernández-Restrepo, M., Hirooka, Y., Hospenthal, D. R., King, A., Lechat, C., Lombard, L., Mang, S. M., Marbach, P. A. S., Marincowitz, S., Marin-Felix, Y., Montaño-Mata, N. J., Moreno, G., Perez, C. A., Pérez Sierra, A. M., Robertson, J. L., Roux, J., Rubio, E., Schumacher, R. K., Stchigel, A. M., Sutton, D. A., Tan, Y. P., Thompson, E. H., van der Linde, E., Walker, A. K., Walker, D. M., Wickes, B. L., Wong, P. T. W. and Groenewald, J. Z. (2014) Fungal Planet description sheets: 214-280. Persoonia, 32 . pp. 184-306. https://doi.org/10.3767/003158514X682395

Crous, P.W., Wingfield, M.J., Schumacher, R.K., Summerell, B.A., Giraldo, A., Gené, J., Guarro, J., Wanasinghe, D.N., Hyde, K.D., Camporesi, E., Garethjones, E.B., Thambugala, K.M., Malysheva, E.F., Malysheva, V.F., Acharya, K., Alvarez, J., Alvarado, P., Assefa, A., Barnes, C.W., Bartlett, J. S., Blanchette, R.A., Burgess, T.I., Carlavilla, J.R., Coetzee, M.P.A., Damm, U., Decock, C.A., Denbreeÿen, A., Devries, B., Dutta, A.K., Holdom, D.G., Rooney-Latham, S., Manjón, J.L., Marincowitz, S., Mirabolfathy, M., Moreno, G., Nakashima, C., Papizadeh, M., Shahzadehfazeli, S.A., Amoozegar, M.A., Romberg, M.K., Shivas, R. G., Stalpers, J.A., Stielow, B., Stukely, M.J.C., Swart, W.J., Tan, Y. P., Vanderbank, M., Wood, A.R., Zhang, Y. and Groenewald, J.Z. (2014) Fungal Planet description sheets: 281–319. Persoonia - Molecular Phylogeny and Evolution of Fungi, 33 (1). p. 212. https://doi.org/10.3767/003158514x685680

Dockter, C., Gruszka, D., Braumann, I., Druka, A., Druka, I., Franckowiak, J., Gough, S. P., Janeczko, A., Kurowska, M., Lundqvist, J., Lundqvist, U., Marzec, M., Matyszczak, I., Muller, A. H., Oklestkova, J., Schulz, B., Zakhrabekova, S. and Hansson, M. (2014) Induced Variations in Brassinosteroid Genes Define Barley Height and Sturdiness, and Expand the Green Revolution Genetic Toolkit. Plant Physiology, 166 (4). pp. 1912-1927. https://doi.org/10.1104/pp.114.250738

Encina, C. L., Parisi, A., O'Brien, C. and Mitter, N. (2014) Enhancing somatic embryogenesis in avocado (Persea americana Mill.) using a two-step culture system and including glutamine in the culture medium. Scientia Horticulturae, 165 . pp. 44-50. https://doi.org/10.1016/j.scienta.2013.10.019

Fekybelu, S. (2014) Pre-emptive breeding to combine superior eating quality in tropical super sweet corn with resistance to major diseases. Project Report. Horticulture Australia Limited:.

Hammer, G. L., McLean, G., Chapman, S., Zheng, B., Doherty, A., Harrison, M. T., van Oosterom, E. and Jordan, D. (2014) Crop design for specific adaptation in variable dryland production environments. Crop and Pasture Science, 65 (7). pp. 614-626. https://doi.org/10.1071/CP14088

Herrington, M. E., Hardner, C., Wegener, M., Woolcock, L. and Dieters, M. J. (2014) Estimating an Aggregate Economic Genotype to Facilitate Breeding and Selection of Strawberry Genotypes in Southeast Queensland. Journal of the American Society for Horticultural Science, 139 (3). pp. 253-260.

Hyde, K. D., Nilsson, R. H., Alias, S. A., Ariyawansa, H. A., Blair, J. E., Cai, L., de Cock, A. W. A. M., Dissanayake, A. J., Glockling, S. L., Goonasekara, I. D., Gorczak, M., Hahn, M., Jayawardena, R. S., van Kan, J. A. L., Laurence, M. H., Lévesque, C. A., Li, X., Liu, J.-K., Maharachchikumbura, S. S. N., Manamgoda, D. S., Martin, F. N., McKenzie, E. H. C., McTaggart, A. R., Mortimer, P. E., Nair, P. V. R., Pawłowska, J., Rintoul, T. L., Shivas, R. G., Spies, C. F. J., Summerell, B. A., Taylor, P. W. J., Terhem, R. B., Udayanga, D., Vaghefi, N., Walther, G., Wilk, M., Wrzosek, M., Xu, J.-C., Yan, J. and Zhou, N. (2014) One stop shop: backbones trees for important phytopathogenic genera: I (2014). Fungal Diversity, 67 (1). pp. 21-125. https://doi.org/10.1007/s13225-014-0298-1

James, R.S., Ray, J., Tan, Y. P. and Shivas, R. G. (2014) Colletotrichum siamense, C. theobromicola and C. queenslandicum from several plant species and the identification of C. asianum in the Northern Territory, Australia. Australasian Plant Disease Notes, 9 (1). https://doi.org/10.1007/s13314-014-0138-x

Jordan, D. (2014) Integrating crop improvement technologies for rapid genetic advance. Project Report. Grains Research & Development Corporation.

Le, D., Smith, M. and Aitken, E. (2014) First report of Pythiogeton ramosum (Pythiales) in Australia. Australasian Plant Disease Notes, 9 (1). pp. 1-3. https://doi.org/10.1007/s13314-014-0130-5

Liberato, J.R., McTaggart, A. R. and Shivas, R. G. (2014) First report of Masseeëlla capparis in Australia. Australasian Plant Disease Notes, 9 (1). pp. 1-5. https://doi.org/10.1007/s13314-013-0121-y

Lonhienne, T. G. A., Trusov, Y., Young, A., Rentsch, D., Näsholm, T., Schmidt, S. and Paungfoo-Lonhienne, C. (2014) Effects of externally supplied protein on root morphology and biomass allocation in Arabidopsis. Scientific Reports, 4 .

Mace, E. S., Tai, S., Innes, D. J., Godwin, I., Hu, W., Campbell, B., Gilding, E. K., Cruickshank, A. W., Prentis, P., Wang, J. and Jordan, D. R. (2014) The plasticity of NBS resistance genes in sorghum is driven by multiple evolutionary processes. BMC Plant Biology, 14 (1). p. 253. https://doi.org/10.1186/s12870-014-0253-z

McLean, M. S., Martin, A., Gupta, S., Sutherland, M. W., Hollaway, G. J. and Platz, G. J. (2014) Validation of a new spot form of net blotch differential set and evidence for hybridisation between the spot and net forms of net blotch in Australia. Australasian Plant Pathology, 43 (3). p. 223. https://doi.org/10.1007/s13313-014-0285-8

Paynter, M. L., De Faveri, J. and Herrington, M. E. (2014) Resistance to Fusarium oxysporum f. sp fragariae and Predicted Breeding Values in Strawberry. Journal of the American Society for Horticultural Science, 139 (2). pp. 178-184.

Poulsen, D. (2014) AWCMMP Component: Molecular biology support for barley improvement - Northern Region. Project Report. Grains Research & Development Corporation.

Rebetzke, G. J., Fischer, R. A., van Herwaarden, A. F., Bonnett, D. G., Chenu, K., Rattey, A. R. and Fettell, N. A. (2014) Plot size matters: interference from intergenotypic competition in plant phenotyping studies. Functional Plant Biology, 41 (2). pp. 107-118. https://doi.org/10.1071/FP13177

Reen, R.A., Thompson, J.P., Clewett, T.G., Sheedy, J.G. and Bell, K. L. (2014) Yield response in chickpea cultivars and wheat following crop rotations affecting population densities of Pratylenchus thornei and arbuscular mycorrhizal fungi. Crop and Pasture Science, 65 (5). p. 428. https://doi.org/10.1071/CP13441

Tahami, S. K., Chamani, E., Zare, N., Asghari-Zakaria, R., Mohebodini, M. and Joyce, D. C. (2014) Karyological Characteristics of Lilium ledebourii Boiss and Lilium longiflorum Thunb. CYTOLOGIA, 79 (4). p. 547. https://doi.org/10.1508/cytologia.79.547

Wang, X., Mace, E. S., Hunt, C. H., Cruickshank, A. W., Henzell, R., Parkes, H. A. and Jordan, D. (2014) Two distinct classes of QTL determine rust resistance in sorghum. BMC Plant Biology, 14 (1). https://doi.org/10.1186/s12870-014-0366-4

Werth, J. A. (2014) Improved Integrated Weed Management systems in transgenic farming landscapes. Project Report. Cotton Research Development Corporation.

Wijayawardene, N. N., Crous, P. W., Kirk, P. M., Hawksworth, D. L., Boonmee, S., Braun, U., Dai, D.-Q., D'Souza, M. J., Diederich, P., Dissanayake, A., Doilom, M., Hongsanan, S., Jones, E. B. G., Groenewald, J. Z., Jayawardena, R., Lawrey, J. D., Liu, J.-K., Lücking, R., Madrid, H., Manamgoda, D. S., Muggia, L., Nelsen, M. P., Phookamsak, R., Suetrong, S., Tanaka, K., Thambugala, K. M., Wanasinghe, D. N., Wikee, S., Zhang, Y., Aptroot, A., Ariyawansa, H. A., Bahkali, A. H., Bhat, D. J., Gueidan, C., Chomnunti, P., De Hoog, G. S., Knudsen, K., Li, W.-J., McKenzie, E. H. C., Miller, A. N., Phillips, A. J. L., Piątek, M., Raja, H. A., Shivas, R. G., Slippers, B., Taylor, J. E., Tian, Q., Wang, Y., Woudenberg, J. H. C., Cai, L., Jaklitsch, W. M. and Hyde, K. D. (2014) Naming and outline of Dothideomycetes-2014 including proposals for the protection or suppression of generic names. Fungal diversity, 69 (1). pp. 1-55. https://doi.org/10.1007/s13225-014-0309-2

Ziems, L. A., Hickey, L. T., Hunt, C. H., Mace, E. S., Platz, G. J., Franckowiak, J. D. and Jordan, D. R. (2014) Association mapping of resistance to Puccinia hordei in Australian barley breeding germplasm. Theoretical and Applied Genetics, 127 (5). pp. 1199-1212. https://doi.org/10.1007/s00122-014-2291-1

2013

Bally, I. S.E., Akem, C.N., Dillon, N. L., Grice, K. R.E., Lakhesar, D.P.S. and Stockdale, K. (2013) Screening and breeding for genetic resistance to anthracnose in mango. Acta Horticulturae (992). pp. 239-244.

Christopher, J., Christopher, M. J., Jennings, R., Jones, S., Fletcher, S., Borrell, A., Manschadi, A.M., Jordan, D. R., Mace, E. S. and Hammer, G. L. (2013) QTL for root angle and number in a population developed from bread wheats (Triticum aestivum) with contrasting adaptation to water-limited environments. Theoretical and Applied Genetics, 126 (6). pp. 1563-1574. https://doi.org/10.1007/s00122-013-2074-0

Dickinson, G. R., Wallace, H. M. and Lee, D. J. (2013) Reciprocal and advanced generation hybrids between Corymbia citriodora and C-torelliana: forestry breeding and the risk of gene flow. Annals of Forest Science, 70 (1). pp. 1-10. https://doi.org/10.1007/s13595-012-0231-2

Dillon, N. L., Bally, I. S.E., Hucks, L. A., Wright, C. L., Innes, D. J. and Dietzgen, R. G. (2013) Implementation of SSR markers in mango breeding in Australia. Acta Horticulturae, 992 . pp. 259-267.

Dillon, N. L., Bally, I. S.E., Wright, C. L., Hucks, L. A., Innes, D. J. and Dietzgen, R. G. (2013) Genetic diversity of the Australian National Mango Genebank. Scientia Horticulturae, 150 . pp. 213-226. https://doi.org/10.1016/j.scienta.2012.11.003

Dreccer, M. F., Chapman, S.C., Rattey, A.R., Neal, J. M., Song, Y.H., Christopher, J.T. and Reynolds, M. (2013) Developmental and growth controls of tillering and water-soluble carbohydrate accumulation in contrasting wheat (Triticum aestivum L.) genotypes: can we dissect them? Journal of Experimental Botany, 64 (1). pp. 143-160. https://doi.org/10.1093/jxb/ers317

Fanning, K., Netzeel, M., Gidley, M., Pruneau, D. and Herrington, M. (2013) A dark strawberry may hold increased health benefits. Food Australia, 65 (1). pp. 38-39.

Fekybelu, S. , Owens, L. and Zeppa, A. (2013) Estimates of genetic gain in the phenotypic recurrent selection of tropical maize breeding populations. In: Australian Summer Grains Conference, Gold Coast. Queensland, Australia.

Fekybelu, S. , Zeppa, A. and Martin, I. (2013) Genetic variability in tropical maize breeding populations subjected to reciprocal recurrent selection program. In: 55th Annual Maize genetics conference, Charles, Illinois, USA. .

Fredericks, C. H., Fanning, K. J., Gidley, M. J., Netzel, G., Zabaras, D., Herrington, M. and Netzel, M. (2013) High-anthocyanin strawberries through cultivar selection. Journal of the Science of Food and Agriculture, 93 (4). pp. 846-852. https://doi.org/10.1002/jsfa.5806

Gardiner, D. M., Stiller, J., Covarelli, L., Lindeberg, M., Shivas, R. G. and Manners, J. M. (2013) Genome Sequences of Pseudomonas spp. Isolated from Cereal Crops. Genome Announcements, 1 (3). https://doi.org/10.1128/genomea.00209-13

Hardner, C. M., Wright, C. L. and Bally, I. S.E. (2013) Prediction of breeding values for average fruit weight in mango. Acta Horticulturae, 992 . pp. 245-250. https://doi.org/10.17660/ActaHortic.2013.992.32

Honsho, C., Yuji, K., Hazama, H., Yonemori, K. and Bally, I. S.E. (2013) Genetic relationships of 'Beni-Keitt' to other mango cultivars using microsatellite markers. Acta Horticulturae, 992 . pp. 251-258. https://doi.org/10.17660/actahortic.2013.992.33

Jordan, D. R. (2013) Sorghum pre-breeding contributions to genetic advancement. In: Australian Summer Grains Conference June 17-19th, 2013, Gold Coast, Australia.

Jordan, D.R., Hammer, G.L. and Mace, E. S. (2013) Exploring and exploiting genetic diversity in sorghum. ACIAR Project review meeting: Improving postrainy sorghum varieties to meet the growing grain and fodder demand in India. In: February 19-21st, ICRISAT, India.

Krattinger, S. G., Jordan, D. R., Mace, E. S., Raghavan, C., Luo, M. C., Keller, B. and Lagudah, E. S. (2013) Recent emergence of the wheat Lr34 multi-pathogen resistance: insights from haplotype analysis in wheat, rice, sorghum and Aegilops tauschii. Theoretical and Applied Genetics, 126 (3). pp. 663-672. https://doi.org/10.1007/s00122-013-2059-z

Mace, E. S., Borrell, A.K. and Jordan, D.R. (2013) Sorghum whole genome sequences: a resource to further dissect the genetic control of staygreen. ACIAR Project review meeting: Improving postrainy sorghum varieties to meet the growing grain and fodder demand in India. In: February 19-21st, ICRISAT, India.

Mace, E. S., Hunt, C. H. and Jordan, D. R. (2013) Supermodels: sorghum and maize provide mutual insight into the genetics of flowering time. Theoretical and Applied Genetics, 126 (5). pp. 1377-1395. https://doi.org/10.1007/s00122-013-2059-z

Nguyen, C.T., Singh, V., van Oosterom, E. J., Chapman, S. C., Jordan, D. R. and Hammer, G. L. (2013) Genetic variability in high temperature effects on seed-set in sorghum. Functional Plant Biology, 40 (5). pp. 439-448. https://doi.org/10.1071/FP12264

Rebetzke, G. J., Chenu, K., Biddulph, B., Moeller, C., Deery, D. M., Rattey, A. R., Bennett, D., Barrett-Lennard, E. G. and Mayer, J. E. (2013) A multisite managed environment facility for targeted trait and germplasm phenotyping. Functional Plant Biology, 40 (1). pp. 1-13. https://doi.org/10.1071/FP12180

Saxena, K. B., Kumar, R. V., Tikle, A. N., Saxena, M. K., Gautam, V. S., Rao, S. K., Khare, D. K., Chauhan, Y. S., Saxena, R. K., Reddy, B. V. S., Sharma, D., Reddy, L. J., Green, J. M., Faris, D. G., Nene, Y. L., Mula, M., Sultana, R., Srivastava, R. K., Gowda, C. L. L., Sawargaonkar, S. L. and Varshney, R. K. (2013) ICPH 2671 – the world's first commercial food legume hybrid. Plant Breeding, 132 (5). pp. 479-485. https://doi.org/10.1111/pbr.12045

Sharman, M. and Thomas, J. E. (2013) Genetic diversity of subgroup 1 ilarviruses from eastern Australia. Archives of Virology, 158 (8). pp. 1637-1647. https://doi.org/10.1007/s00705-013-1628-4

Smith, M. W., Gultzow, D. L. and Newman, T. K. (2013) First Fruiting Intergeneric Hybrids between Citrus and Citropsis. Journal of the American Society for Horticultural Science, 138 (1). pp. 57-63.

Tan, Y. P., Edwards, J., Grice, K. R.E. and Shivas, R. G. (2013) Molecular phylogenetic analysis reveals six new species of Diaporthe from Australia. Fungal Diversity, 61 (1). pp. 251-260. https://doi.org/10.1007/s13225-013-0242-9

2012

Brawner, J. T., Dillon, S. K., Lee, D. J., Meder, A. R., Dieters, M. J. and Southerton, S. (2012) The use of genetic correlations to evaluate associations between SNP markers and quantitative traits. Tree Genetics & Genomes, 8 (6). pp. 1423-1435. https://doi.org/10.1007/s11295-012-0530-7

Dickinson, G. R., Lee, D. J. and Wallace, H. M. (2012) The influence of pre- and post-zygotic barriers on interspecific Corymbia hybridization. Annals of Botany, 109 (7). pp. 1215-1226. https://doi.org/10.1093/aob/mcs050

Dillon, S. K., Brawner, J. T., Meder, R., Lee, D. J. and Southerton, S. G. (2012) Association genetics in Corymbia citriodora subsp variegata identifies single nucleotide polymorphisms affecting wood growth and cellulosic pulp yield. New Phytologist, 195 (3). pp. 596-608. https://doi.org/10.1111/j.1469-8137.2012.04200.x

Dreiseitl, A. and Platz, G. (2012) Powdery mildew resistance genes in barley varieties grown in Australia. Crop and Pasture Science, 63 (10). pp. 997-1006. https://doi.org/10.1071/CP12165

Forster, B.P., Franckowiak, J.D., Lundqvist, U., Thomas, W.T.B., Leader, D., Shaw, P., Lyon, J. and Waugh, R. (2012) Mutant phenotyping and pre-breeding in barley. In: Plant mutation breeding and biotechnology. CABI Publishing, 608 pages. https://doi.org/10.1079/9781780640853.0327

Frederiks, T. M., Christopher, J., Harvey, G. L., Sutherland, M. W. and Borrell, A. K. (2012) Current and emerging screening methods to identify post-head-emergence frost adaptation in wheat and barley. Journal of Experimental Botany, 63 (15). pp. 5405-5416. https://doi.org/10.1093/jxb/ers215

Gous, P. W., Martin, A., Lawson, W., Kelly, A. M., Fox, G. P. and Sutherland, M. W. (2012) QTL associated with barley (Hordeum vulgare) feed quality traits measured through in situ digestion. Euphytica, 185 (1). pp. 37-45. https://doi.org/10.1007/s10681-011-0608-6

Hardner, C. M., Bally, I. S.E. and Wright, C. L. (2012) Prediction of breeding values for average fruit weight in mango using a multivariate individual mixed model. Euphytica, 186 (2). pp. 463-477. https://doi.org/10.1007/s10681-012-0639-7

Herrington, M.E., Wegener, M., Hardner, C., Woolcock, L.L. and Dieters, M.J. (2012) Influence of plant traits on production costs and profitability of strawberry in southeast Queensland. Agricultural Systems, 106 (1). pp. 23-32. https://doi.org/10.1016/j.agsy.2011.11.003

Hickey, L., Lawson, W., Platz, G., DeLacy, I., Dieters, M. and Franckowiak, J. (2012) Accelerated gene transfer in barley: combining high-throughput phenotyping and genotyping information. In: 11th International Barley Genetics Symposium, Hangzhou, China..

Hickey, L. T., Lawson, W., Arief, V. N., Fox, G., Franckowiak, J. and Dieters, M. J. (2012) Grain dormancy QTL identified in a doubled haploid barley population derived from two non-dormant parents. Euphytica, 188 (1). pp. 113-122. https://doi.org/10.1007/s10681-011-0577-9

Hickey, L. T., Lawson, W., Platz, G. J., Dieters, M. and Franckowiak, J. (2012) Origin of leaf rust adult plant resistance gene Rph20 in barley. Genome, 55 (5). pp. 396-399. https://doi.org/10.1139/g2012-022

Hickey, L. T., Wilkinson, P. M., Knight, C. R., Godwin, I. D., Kravchuk, O. Y., Aitken, E. A. B., Bansal, U. K., Bariana, H. S., DeLacy, I. H. and Dieters, M. J. (2012) Rapid phenotyping for adult-plant resistance to stripe rust in wheat. Plant Breeding, 131 (1). pp. 54-61. https://doi.org/10.1111/j.1439-0523.2011.01925.x

Hickey, L. T., Lawson, W., Platz, G. J., Fowler, R. A., Arief, V., Dieters, M. J., Germán, S. E., Fletcher, S., Park, R. F., Singh, D., Pereyra, S. A. and Franckowiak, J. D. (2012) Mapping Quantitative Trait Loci for Partial Resistance to Powdery Mildew in an Australian Barley Population. Crop Science, 52 (3). pp. 1021-1032. https://doi.org/10.2135/cropsci2011.10.0535

Houston, K., Druka, A., Bonar, N., Macaulay, M., Lundqvist, U., Franckowiak, J., Morgante, M., Stein, N. and Waugh, R. (2012) Analysis of the barley bract suppression gene Trd1. Theoretical and Applied Genetics, 125 (1). pp. 33-45. https://doi.org/10.1007/s00122-012-1814-x

Jordan, D. R., Hunt, C. H., Cruickshank, A., Borrell, A. and Henzell, R. G. (2012) The Relationship Between the Stay-Green Trait and Grain Yield in Elite Sorghum Hybrids Grown in a Range of Environments. Crop Science, 52 (3). pp. 1153-1161. https://doi.org/10.2135/cropsci2011.06.0326

Karan, M., Evans, D.S., Reilly, D., Schulte, K., Wright, C. L., Innes, D. J., Holton, T.A., Nikles, D.G. and Dickinson, G. R. (2012) Rapid microsatellite marker development for African mahogany ( Khaya senegalensis, Meliaceae) using next-generation sequencing and assessment of its intra-specific genetic diversity. Molecular Ecology Resources, 12 (2). pp. 344-353. https://doi.org/10.1111/j.1755-0998.2011.03080.x

Katoh, H., Davis, R., Smith, M. W., Weinert, M. and Iwanami, T. (2012) Differentiation of Indian, East Timorese, Papuan and Floridian Candidatus Liberibacter asiaticus' isolates on the basis of simple sequence repeat and single nucleotide polymorphism profiles at 25 loci. Annals of Applied Biology, 160 (3). pp. 291-297. https://doi.org/10.1111/j.1744-7348.2012.00541.x

Lundqvist, U., Franckowiak, J.D. and Forster, B.P. (2012) Mutation categories. In: Plant mutation breeding and biotechnology. CABI Publishing, 608 pages. https://doi.org/10.1079/9781780640853.0047

McLean, M.S., Howlett, B.J., Turkington, T.K., Platz, G.J. and Hollaway, G.J. (2012) Spot Form of Net Blotch Resistance in a Diverse Set of Barley Lines in Australia and Canada. Plant Disease, 96 (4). pp. 569-576. https://doi.org/10.1094/PDIS-06-11-0477

Sandhu, K.S., Forrest, K.L., Kong, S., Bansal, U.K., Singh, D., Hayden, M.J. and Park, R.F. (2012) Inheritance and molecular mapping of a gene conferring seedling resistance against Puccinia hordei in the barley cultivar Ricardo. Theoretical and Applied Genetics, 125 . pp. 1403-1411. https://doi.org/10.1007/s00122-012-1921-8

Shahinnia, F., Druka, A., Franckowiak, J., Morgante, M., Waugh, R. and Stein, N. (2012) High resolution mapping of Dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H. Theoretical and Applied Genetics, 124 (2). pp. 373-384. https://doi.org/10.1007/s00122-011-1712-7

Shepherd, M., Henson, M. and Lee, D. J. (2012) Revisiting genetic structuring in spotted gums (genus Corymbia section Maculatae) focusing on C. maculata, an early diverged, insular lineage. Tree Genetics & Genomes, 8 (1). pp. 137-147. https://doi.org/10.1007/s11295-011-0428-9

Shewayrga, H., Sopade, P. A., Jordan, D. R. and Godwin, I. D. (2012) Characterisation of grain quality in diverse sorghum germplasm using a Rapid Visco-Analyzer and near infrared reflectance spectroscopy. Journal of the Science of Food and Agriculture, 92 (7). pp. 1402-1410. https://doi.org/10.1002/jsfa.4714

Singh, V., van Oosterom, E. J., Jordan, D. R. and Hammer, G. L. (2012) Genetic control of nodal root angle in sorghum and its implications on water extraction. European Journal of Agronomy, 42 . pp. 3-10.

Solomon, K.F., Martin, I. and Zeppa, A. (2012) Genetic effects and genetic relationships among shrunken (sh2) sweet corn lines and F1 hybrids. Euphytica, 185 (3). pp. 385-394. https://doi.org/10.1007/s10681-011-0555-2

Solomon, K.F., Zeppa, A. and Mulugeta, S.D. (2012) Combining ability, genetic diversity and heterosis in relation to F1 performance of tropically adapted shrunken (sh2) sweet corn lines. Plant Breeding, 131 (3). pp. 430-436. https://doi.org/10.1111/j.1439-0523.2012.01965.x

Thompson, J. P., Zwart, R. S. and Butler, D. (2012) Inheritance of resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus) in five doubled-haploid populations of wheat. Euphytica, 188 (2). pp. 209-219. https://doi.org/10.1007/s10681-012-0689-x

Topp, B. L., Hardner, C. M. and Kelly, A. M. (2012) Strategies for breeding macadamias in Australia. Acta Horticulturae (935). pp. 47-53. https://doi.org/10.17660/ActaHortic.2012.935.6

2011

Druka, A., Franckowiak, J., Lundqvist, U., Bonar, N., Alexander, J., Houston, K., Radovic, S., Shahinnia, F., Vendramin, V., Morgante, M., Stein, N. and Waugh, R. (2011) Genetic Dissection of Barley Morphology and Development. Plant Physiology, 155 (2). pp. 617-627. https://doi.org/10.1104/pp.110.166249

Fox, G. P., Kelly, A. M., Sweeney, N. and Hocroft, D. M. (2011) Development of a Single Kernel NIR Barley Protein Calibration and Assessment of Variation in Protein on Grain Quality. Journal of the Institute of Brewing, 117 (4). pp. 582-586. https://doi.org/10.1002/j.2050-0416.2011.tb00507.x

Frederiks, T. M., Christopher, J., Fletcher, S.E.H. and Borrell, A. (2011) Post head-emergence frost resistance of barley genotypes in the northern grain region of Australia. Crop & Pasture Science, 62 (9). pp. 736-745. https://doi.org/10.1071/CP11079

Friedt, W., Horsley, R. D., Harvey, B. L., Poulsen, D. M. E., Lance, R. C. M., Ceccarelli, S., Grando, S. and Capettini, F. (2011) Barley Breeding History, Progress, Objectives, and Technology. In: Barley: Production, Improvement, and Uses. Blackwell Publishing, 637 pages. https://doi.org/10.1002/9780470958636.ch8

Frère, C. H., Prentis, P. J., Gilding, E. K., Mudge, A. M., Cruickshank, A. and Godwin, I. D. (2011) Lack of Low Frequency Variants Masks Patterns of Non-Neutral Evolution following Domestication. PLOS ONE, 6 (8). e23041. https://doi.org/10.1371/journal.pone.0023041

George-Jaeggli, B., Jordan, D. R., van Oosterom, E. J. and Hammer, G. L. (2011) Decrease in sorghum grain yield due to the dw3 dwarfing gene is caused by reduction in shoot biomass. Field Crops Research, 124 (2). pp. 231-239. https://doi.org/10.1016/j.fcr.2011.07.005

Herrington, M.E., Hardner, C., Wegener, M., Woolcock, L.L. and Dieters, M.J. (2011) Rain Damage to Strawberries Grown in Southeast Queensland: Evaluation and Genetic Control. Hortscience, 46 (6). pp. 832-837.

Hickey, L. T., Lawson, W., Platz, G. J., Dieters, M., Arief, V. N., Germán, S., Fletcher, S., Park, R. F., Singh, D., Pereyra, S. and Franckowiak, J. (2011) Mapping Rph20: a gene conferring adult plant resistance to Puccinia hordei in barley. Theoretical and Applied Genetics, 123 (1). pp. 55-68. https://doi.org/10.1007/s00122-011-1566-z

Jordan, D. R., Klein, R. R., Sakrewski, K. G., Henzell, R. G., Klein, P. E. and Mace, E. S. (2011) Mapping and characterization of Rf(5): a new gene conditioning pollen fertility restoration in A(1) and A(2) cytoplasm in sorghum (Sorghum bicolor (L.) Moench). Theoretical and Applied Genetics, 123 (3). pp. 383-396.

Jordan, D. R., Mace, E. S., Cruickshank, A., Hunt, C. H. and Henzell, R.G. (2011) Exploring and Exploiting Genetic Variation from Unadapted Sorghum Germplasm in a Breeding Program. Crop Science, 51 (4). pp. 1444-1457. https://doi.org/10.2135/cropsci2010.06.0326

Li, X., Ison, R. L., Kellaway, R. C., Stimson, C., Annison, G. and Joyce, D. C. (2011) Agronomic characteristics of annual Trifolium legumes and nutritive values as predicted by near-infrared reflectance (NIR) spectroscopy. Crop and Pasture Science, 62 (12). pp. 1078-1087. https://doi.org/10.1071/CP10158

Ramsay, L., Comadran, J., Druka, A., Marshall, D. F., Thomas, W. T.B., Macaulay, M., MacKenzie, K., Simpson, C., Fuller, J., Bonar, N., Hayes, P. M., Lundqvist, U., Franckowiak, J. D., Close, T. J., Muehlbauer, G. J. and Waugh, R. (2011) INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nature Genetics, 43 . pp. 169-172. https://doi.org/10.1038/ng.745

Singh, V., van Oosterom, E. J., Jordan, D. R., Hunt, C. H. and Hammer, G. L. (2011) Genetic variability and control of nodal root angle in sorghum. Crop Science, 51 (5). pp. 2011-2020. https://doi.org/10.2135/cropsci2011.01.0038

Thompson, S.M., Tan, Y. P., Young, A.J., Neate, S.M., Aitken, E.A.B. and Shivas, R. G. (2011) Stem cankers on sunflower (Helianthus annuus) in Australia reveal a complex of pathogenic Diaporthe (Phomopsis) species. Persoonia, 27 . pp. 80-89. https://doi.org/10.3767/003158511x617110

2010

Bovill, J., Lehmensiek, A., Sutherland, M. W., Platz, G. J., Usher, T., Franckowiak, J. and Mace, E. S. (2010) Mapping spot blotch resistance genes in four barley populations. Molecular Breeding, 26 (4). pp. 653-666. https://doi.org/10.1007/s11032-010-9401-9

Bovill, W. D., Horne, M., Herde, D., Davis, M., Wildermuth, G. B. and Sutherland, M. W. (2010) Pyramiding QTL increases seedling resistance to crown rot (Fusarium pseudograminearum) of wheat (Triticum aestivum). Theoretical and Applied Genetics, 121 (1). pp. 127-136. https://doi.org/10.1007/s00122-010-1296-7

Druka, A., Franckowiak, J., Lundqvist, U., Bonar, N., Alexander, J., Guzy-Wrobelska, J., Ramsay, L., Druka, I., Grant, I., Macaulay, M., Vendramin, V., Shahinnia, F., Radovic, S., Houston, K., Harrap, D., Cardle, L., Marshall, D., Morgante, M., Stein, N. and Waugh, R. (2010) Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions, 38 (2). pp. 683-688. https://doi.org/10.1042/BST0380683

Fanning, K. J., Martin, I., Wong, L., Keating, V., Pun, S. and O'Hare, T. (2010) Screening sweetcorn for enhanced zeaxanthin concentration. Journal of the Science of Food and Agriculture, 90 (1). pp. 91-96. https://doi.org/10.1002/jsfa.3787

Franckowiak, J.D. and Lundqvist, U. (2010) Coordinator's report: descriptions of barley genetic stocks for 2010. Barley Genetics Newsletter, 40 . pp. 45-177.