Items where Subject is "Microbial ecology"

Article

Al-Ajmi, D., Padmanabha, J., Denman, S.E., Gilbert, R. A., Al Jassim, R.A.M. and McSweeney, C.S. (2006) Evaluation of a PCR detection method for Escherichia coli O157:H7/H– bovine faecal samples. Letters in Applied Microbiology, 42 (4). pp. 386-391. https://doi.org/10.1111/j.1472-765X.2005.01850.x

Attwood, G. T., Altermann, E., Kelly, W. J., Leahy, S. C., Zhang, L. and Morrison, M. (2011) Exploring rumen methanogen genomes to identify targets for methane mitigation strategies. Animal Feed Science and Technology, 166–16 . pp. 65-75. https://doi.org/10.1016/j.anifeedsci.2011.04.004

Bettelheim, K.A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C.S. (2005) The diversity of Escherichia coli serotypes and biotypes in cattle faeces. Journal of Applied Microbiology, 98 (3). pp. 699-709. https://doi.org/10.1111/j.1365-2672.2004.02501.x

Bickel, T. O. and Schooler, S. S. (2015) Effect of water quality and season on the population dynamics of Cabomba caroliniana in subtropical Queensland, Australia. Aquatic Botany, 123 . pp. 64-71. https://doi.org/10.1016/j.aquabot.2015.02.003

Browne, D. J., Miller, C. M., O'Hara, E. P., Courtney, R., Seymour, J., Doolan, D. L. and Orr, R. (2024) Optimization and application of bacterial environmental DNA and RNA isolation for qualitative and quantitative studies. Environmental DNA, 6 (4). e589. https://doi.org/10.1002/edn3.589

Chinivasagam, H.N. and Blackall, P. J. (2009) The re-use of water in agricultural settings. Microbiology Australia, 30 (1). pp. 38-39. https://doi.org/10.1071/MA09038

Crombie, A., Kalaitzis, J. A., Chen, R., Vuong, D., Lacey, A. E., Lacey, E., Shivas, R. G., Tan, Y. P., Sbaraini, N., Chooi, Y.-H. and Piggott, A. M. (2024) Geministatins: new depside antibiotics from the fungus Austroacremonium gemini. The Journal of Antibiotics, 77 . pp. 639-646. https://doi.org/10.1038/s41429-024-00755-x

Dennis, P. G., Kukulies, T., Forstner, C., Orton, T. G. and Pattison, A. B. (2018) The effects of glyphosate, glufosinate, paraquat and paraquat-diquat on soil microbial activity and bacterial, archaeal and nematode diversity. Scientific Reports, 8 (1). p. 2119. https://doi.org/10.1038/s41598-018-20589-6

Gilbert, R. A., Denman, S. E., Padmanabha, J., Fegan, N., Al Ajmi, D. and McSweeney, C. S. (2008) Effect of diet on the concentration of complex Shiga toxin-producing Escherichia coli and EHEC virulence genes in bovine faeces, hide and carcass. International Journal of Food Microbiology, 121 (2). pp. 208-216. https://doi.org/10.1016/j.ijfoodmicro.2007.11.019

Gilbert, R. A., Tomkins, N., Padmanabha, J., Gough, J.M., Krause, D.O. and McSweeney, C.S. (2005) Effect of finishing diets on Escherichia coli populations and prevalence of enterohaemorrhagic E. coli virulence genes in cattle faeces. Journal of Applied Microbiology, 99 (4). pp. 885-894. https://doi.org/10.1111/j.1365-2672.2005.02670.x

Goncharov, A. V., Baturina, N. S., Maryinsky, V. V., Kaus, A. K. and Chalov, S. R. (2020) Ecological assessment of the Selenga River basin, the main tributary of Lake Baikal, using aquatic macroinvertebrate communities as bioindicators. Journal of Great Lakes Research, 46 (1). pp. 53-61. https://doi.org/10.1016/j.jglr.2019.11.005

Goulden, E. F., Hall, M. R., Pereg, L. L., Baillie, B. K. and Høj, L. (2013) Probiont niche specialization contributes to additive protection against V ibrio owensii in spiny lobster larvae. Environmental Microbiology Reports, 5 (1). pp. 39-48. https://doi.org/10.1111/1758-2229.12007

Grant, L. J., Mikkelsen, D., Phan, A. D. T., Kang, S., Ouwerkerk, D., Klieve, A. V., Gidley, M. J. and Williams, B. A. (2020) Purified plant cell walls with adsorbed polyphenols alter porcine faecal bacterial communities during in vitro fermentation. Food & Function, 11 (1). pp. 834-845. https://doi.org/10.1039/C9FO02428J

Guthrie, J.A., Dunlop, K.J. and Saunders, G.A. (1994) Use of Petrifilm(R) 3M to assess coliform numbers on lamb carcasses. Journal of Food Protection, 57 (10). pp. 924-927.

Hau, E. E. R., Sly, P. D., Mikkelsen, D., Taneja, N., Penjor, K., Ryu, S., Donner, E., Mollinger, J. L., Ferreira, J. P., Schipp, M. and Soares Magalhaes, R. J. (2024) Design characteristics of integrated surveillance of antimicrobial resistance at the human, animal, and environment interfaces. CABI Reviews, 19 (1). https://doi.org/10.1079/cabireviews.2024.0047

Hernández-Restrepo, M., Bezerra, J., Tan, Y. P., Wiederhold, N., Crous, P., Guarro, J. and Gené, J. (2019) Re-evaluation of Mycoleptodiscus species and morphologically similar fungi. Persoonia, 42 . pp. 205-227. https://doi.org/10.3767/persoonia.2019.42.08

Jackson, A.O., Dietzgen, R.G., Goodin, M.M., Bragg, J.N. and Deng, M. (2005) Biology of Plant Rhabdoviruses. Annual Review Phytopathology, 43 . pp. 623-660. https://doi.org/10.1146/annurev.phyto.43.011205.141136

Klieve, A. V. and Swain, R. A. (1993) Estimation of ruminal bacteriophage numbers by pulsed-field gel electrophoresis and laser densitometry. Applied and Environmental Microbiology, 59 (7). pp. 2299-2303. https://doi.org/10.1128/aem.59.7.2299-2303.1993

Klieve, A.V., Bain, P.A., Yokoyama, M.T., Ouwerkerk, D., Foster, R.J. and Turner, A.F. (2004) Bacteriophages that infect the cellulolytic ruminal bacterium Ruminococcus albus AR67. Letters in Applied Microbiology, 38 (4). pp. 333-338. https://doi.org/10.1111/j.1472-765X.2004.01493.x

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1996) Bacteriophages in the rumen: types present, population size and implications for the efficiency of feed utilisation. Proceedings of the Australian Society of Animal Production, 21 . pp. 92-94.

Le, D. P., Smith, M. K. and Aitken, E. A. B. (2017) Genetic variation in Pythium myriotylum based on SNP typing and development of a PCR-RFLP detection of isolates recovered from Pythium soft rot ginger. Letters in Applied Microbiology, 65 (4). pp. 319-326. https://doi.org/10.1111/lam.12779

Loh, Z. H., Ouwerkerk, D., Klieve, A. V., Hungerford, N. L. and Fletcher, M. T. (2020) Toxin Degradation by Rumen Microorganisms: A Review. Toxins, 12 (10). https://doi.org/10.3390/toxins12100664

Lyons, R., Clarke, A.-B. C., Lapis-Gaza, H. R., Sun, J., Birt, H. W. G., Pattison, A. B. and Dennis, P. G. (2025) Landuse affects the likelihood of soil colonization by a key plant pathogen. Agriculture, Ecosystems & Environment, 393 . p. 109814. https://doi.org/10.1016/j.agee.2025.109814

Mackie, R.I., Aminov, R.I., Hu, W., Klieve, A.V., Ouwerkerk, D., Sundset, M.A. and Kamagata, Y. (2003) Ecology of uncultivated oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches. Applied and Environmental Microbiology, 69 (11). pp. 6808-6815. https://doi.org/10.1128/AEM.69.11.6808-6815.2003

Milinovich, G.J., Burrell, P.C., Pollitt, C.C., Klieve, A.V., Blackall, L.L., Ouwerkerk, D., Woodland, E. and Trott, D.J. (2008) Microbial ecology of the equine hindgut during oligofructose-induced laminitis. ISME Journal, 2 (11). pp. 1089-1100. https://doi.org/10.1038/ismej.2008.67

Mostert, D., Wicker, E., de Jager, M. M., Al Kaabi, S. M., O’Neill, W. T., Perry, S., Li, C., Ganyun, Y., Pegg, K. G., Mostert, L. and Viljoen, A. (2022) A Polyphasic Approach Reveals Novel Genotypes and Updates the Genetic Structure of the Banana Fusarium Wilt Pathogen. Microorganisms, 10 (2). p. 269. https://doi.org/10.3390/microorganisms10020269

Nguyen, N. H. T., Bickel, T. O., Perrett, C. and Adkins, S. (2021) Alien invasive macrophyte put into the shade: The native floating-leaved macrophyte Nymphoides indica reduces Cabomba caroliniana growth performance through competition for light. Freshwater Biology, 66 (6). pp. 1123-1135. https://doi.org/10.1111/fwb.13705

O'Connor-Shaw, R.E., Guthrie, J.A., Dunlop, K.J. and Roberts, R. (1995) Coliforms in processed mango: Significance and control. International Journal of Food Microbiology, 25 (1). pp. 51-61. https://doi.org/10.1016/0168-1605(94)00083-I

Oakey, J., Gibson, L. F. and George, A. M. (1998) Co-migration of RAPD-PCR amplicons fromAeromonas hydrophila. FEMS Microbiology Letters, 164 (1). pp. 35-38. https://doi.org/10.1111/j.1574-6968.1998.tb13064.x

Ooi, M. C., Goulden, E. F., Smith, G. G., Nowak, B. F. and Bridle, A. R. (2017) Developmental and gut-related changes to microbiomes of the cultured juvenile spiny lobster Panulirus ornatus. FEMS Microbiology Ecology, 93 (12). https://doi.org/10.1093/femsec/fix159

Osman, A.M. (2003) Barley and malt proteins and proteinases: l. Highly degradable barley protein fraction (hdbpf), a suitable substrate for malt endoprotease assay. Journal of the Institute of Brewing, 109 (2). pp. 135-141.

Osman, A.M. (2003) Barley and malt proteins and proteinases: ll. The purification and characterisation of five malt endoproteases, using the highly degradable barley protein fraction (HDBPF) substrate. Journal of the Institute of Brewing, 109 (2). pp. 142-149.

Osman, A.M. (2003) Barley and malt proteins and proteinases: lll. A simple method for estimating the combined actions of malt proteinases and the extent of protein degradation during malting. Journal of the Institute of Brewing, 109 (2). pp. 150-153.

Osman, A.M., Coverdale, S.M., Onley-Watson, K., Bell, D. and Healy, P. (2003) The gel filtration chromatographic-profiles of proteins and peptides of wort and beer: Effects of processing - malting, mashing, kettle boiling, fermentation and filtering. Journal of the Institute of Brewing, 109 (1). pp. 41-50.

Reeson, A.F., Jankovic, T., Kasper, M.L., Rogers, S. and Austin, A.D. (2003) Application of 16S rDNA-DGGE to examine the microbial ecology associated with a social wasp Vespula germanica. Insect Molecular Biology, 12 (1). pp. 85-91. https://doi.org/10.1046/j.1365-2583.2003.00390.x

Rodrigues Jardim, B., Gambley, C., Tran-Nguyen, L. T. T., Webster, C., Kehoe, M., Kinoti, W. M., Bond, S., Davis, R., Jones, L., Pathania, N., Sharman, M., Chapman, T., Rodoni, B. C. and Constable, F. E. (2024) A metagenomic investigation of phytoplasma diversity in Australian vegetable growing regions. Microbial Genomics, 10 (3). https://doi.org/10.1099/mgen.0.001213

Rodrigues Jardim, B., Kinoti, W. M., Tran-Nguyen, L. T. T., Gambley, C., Rodoni, B. and Constable, F. E. (2021) ‘Candidatus Phytoplasma stylosanthis’, a novel taxon with a diverse host range in Australia, characterised using multilocus sequence analysis of 16S rRNA, secA, tuf, and rp genes. International Journal of Systematic and Evolutionary Microbiology, 71 (1). https://doi.org/10.1099/ijsem.0.004589

Rodrigues Jardim, B., Tran-Nguyen, L. T. T., Gambley, C., Al-Sadi, A. M., Al-Subhi, A. M., Foissac, X., Salar, P., Cai, H., Yang, J.-Y., Davis, R., Jones, L., Rodoni, B. and Constable, F. E. (2023) The observation of taxonomic boundaries for the 16SrII and 16SrXXV phytoplasmas using genome-based delimitation. International Journal of Systematic and Evolutionary Microbiology, 73 (7). https://doi.org/10.1099/ijsem.0.005977

Seshadri, R., Leahy, S. C., Attwood, G. T., Teh, K. H., Lambie, S. C., Cookson, A. L., Eloe-Fadrosh, E. A., Pavlopoulos, G. A., Hadjithomas, M., Varghese, N. J., Paez-Espino, D., Perry, R., Henderson, G., Creevey, C. J., Terrapon, N., Lapebie, P., Drula, E., Lombard, V., Rubin, E., Kyrpides, N. C., Henrissat, B., Woyke, T., Ivanova, N. N., Kelly, W. J., Palevic, N., Janssen, P. H., Ronimus, R. S., Noel, S., Soni, P., Reilly, K., Atherly, T., Ziemer, C., Wright, A., Ishaq, S., Cotta, S., Thompson, S., Crosley, K., McKain, S., Wallace, R. J., Flint, H. J., Martin, J. C., Forster, R. J., Gruninger, R. J., McAllister, T., Gilbert, R. A., Ouwerkerk, D., Klieve, A., Jassim, R. A., Denman, S., McSweeney, C., Rosewarne, S., Koike, S., Kobayashi, Y., Mitsumori, M., Shinkai, T., Cravero, S. and Cerón Cucchi, T. (2018) Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnology, 36 (4). pp. 359-367. https://doi.org/10.1038/nbt.4110

Swain, R. A., Klieve, A. V. and Nolan, J. V. (1996) Factors affecting the rumen bacteriophage population. Proceedings of the Australian Society of Animal Production, 21 . p. 409.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1996) Natural variability and diurnal fluctuations within the bacteriophage population of the rumen. Applied and Environmental Microbiology, 62 (3). pp. 994-997. https://doi.org/10.1128/aem.62.3.994-997.1996

Thomas, R.J., Gardner, E.A., Barry, G.A., Chinivasagam, H.N., Green, P.E., Klieve, A.V., Blackall, P.J., Blight, G.W. and Blayney, B.J. (2000) Indicator organism levels in effluent from Queensland coastal STPS. Water, 27 . pp. 38-45.

Book Section

Field, H., Crameri, G., Kung, N. and Wang, L.-F. (2012) Ecological Aspects of Hendra Virus. In: Henipavirus Current Topics in Microbiology and Immunology. Current Topics in Microbiology and Immunology, 359 . Springer Berlin Heidelberg. https://doi.org/10.1007/82_2012_214

Klieve, A. V. (2005) Bacteriophages. In: Methods in Gut Microbial Ecology for Ruminants. Springer, 226 pages.

Monograph

Ouwerkerk, D., Gilbert, R. A. and Klieve, A. (2011) Archaeaphage therapy to control rumen methanogens. Project Report. Meat & Livestock Australia Limited.

Conference or Workshop Item

Bell, M. J., Garside, A. L., Stirling, G. R., Magarey, R. C., Moody, P. W., Halpin, N. V., Berthelsen, J.E. and Bull, J. I. (2006) Impact of fallow length, organic amendments, break crops and tillage on soil biota and sugarcane growth. In: 28th Annual Conference of the Australian Society of Sugar Cane Technologists, ASSCT 2006.

Bettelheim, K. A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C. S. (2003) The diversity of Escherichia coli serotypes and biotypes in cattle faeces and the effects of diet-induced changes. In: Microbiology: Art in Science, Joint Meeting of the Australian and New Zealand Societies for Microbiology, 28 September - 2 October 2003, Auckland, New Zealand.

Gilbert, R. A., Klieve, A. V. and Nolan, J. V. (2000) Survival of phage particles in the rumen ecosystem. In: Australian Society for Microbiology Annual Scientific Meeting, 8-13 July 2000, Cairns, Queensland.

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1993) Natural variability and diurnal fluctuation of bacteriophage populations in the rumen. In: 22nd Biennial Conference on Rumen Function, November 9-11, 1993, Chicago, USA.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1996) Effect of tannic acid on the bacteriophage populations within sheep rumen. In: Microbiology Australia, International meeting and exhibition of the Australian and New Zealand societies for microbiology, Christchurch, New Zealand.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Bryant 70th Symposium, Illinois, USA.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Australian Society for Microbiology Annual Scientific Meeting, 24-29 September 1995, Canberra, ACT, Australia..

Thesis

Bowen, M. K. (2003) Efficiency of microbial protein production in cattle grazing tropical pastures. PhD thesis, University of Queensland, 315 pages.