Items where Subject is "Microbial ecology"

2024

Browne, D. J., Miller, C. M., O'Hara, E. P., Courtney, R., Seymour, J., Doolan, D. L. and Orr, R. (2024) Optimization and application of bacterial environmental DNA and RNA isolation for qualitative and quantitative studies. Environmental DNA, 6 (4). e589.

Crombie, A., Kalaitzis, J. A., Chen, R., Vuong, D., Lacey, A. E., Lacey, E., Shivas, R. G., Tan, Y. P., Sbaraini, N., Chooi, Y.-H. and Piggott, A. M. (2024) Geministatins: new depside antibiotics from the fungus Austroacremonium gemini. The Journal of Antibiotics, 77 . pp. 639-646. ISSN 1881-1469

Hau, E. E. R., Sly, P. D., Mikkelsen, D., Taneja, N., Penjor, K., Ryu, S., Donner, E., Mollinger, J. L., Ferreira, J. P., Schipp, M. and Soares Magalhaes, R. J. (2024) Design characteristics of integrated surveillance of antimicrobial resistance at the human, animal, and environment interfaces. CABI Reviews, 19 (1).

Rodrigues Jardim, B., Gambley, C., Tran-Nguyen, L. T. T., Webster, C., Kehoe, M., Kinoti, W. M., Bond, S., Davis, R., Jones, L., Pathania, N., Sharman, M., Chapman, T., Rodoni, B. C. and Constable, F. E. (2024) A metagenomic investigation of phytoplasma diversity in Australian vegetable growing regions. Microbial Genomics, 10 (3). ISSN 2057-5858

2023

Rodrigues Jardim, B., Tran-Nguyen, L. T. T., Gambley, C., Al-Sadi, A. M., Al-Subhi, A. M., Foissac, X., Salar, P., Cai, H., Yang, J.-Y., Davis, R., Jones, L., Rodoni, B. and Constable, F. E. (2023) The observation of taxonomic boundaries for the 16SrII and 16SrXXV phytoplasmas using genome-based delimitation. International Journal of Systematic and Evolutionary Microbiology, 73 (7). ISSN 1466-5034

2022

Mostert, D., Wicker, E., de Jager, M. M., Al Kaabi, S. M., O’Neill, W. T., Perry, S., Li, C., Ganyun, Y., Pegg, K. G., Mostert, L. and Viljoen, A. (2022) A Polyphasic Approach Reveals Novel Genotypes and Updates the Genetic Structure of the Banana Fusarium Wilt Pathogen. Microorganisms, 10 (2). p. 269. ISSN 2076-2607

2021

Nguyen, N. H. T., Bickel, T. O., Perrett, C. and Adkins, S. (2021) Alien invasive macrophyte put into the shade: The native floating-leaved macrophyte Nymphoides indica reduces Cabomba caroliniana growth performance through competition for light. Freshwater Biology, 66 (6). pp. 1123-1135. ISSN 0046-5070

Rodrigues Jardim, B., Kinoti, W. M., Tran-Nguyen, L. T. T., Gambley, C., Rodoni, B. and Constable, F. E. (2021) ‘Candidatus Phytoplasma stylosanthis’, a novel taxon with a diverse host range in Australia, characterised using multilocus sequence analysis of 16S rRNA, secA, tuf, and rp genes. International Journal of Systematic and Evolutionary Microbiology, 71 (1). ISSN 1466-5026

2020

Goncharov, A. V., Baturina, N. S., Maryinsky, V. V., Kaus, A. K. and Chalov, S. R. (2020) Ecological assessment of the Selenga River basin, the main tributary of Lake Baikal, using aquatic macroinvertebrate communities as bioindicators. Journal of Great Lakes Research, 46 (1). pp. 53-61. ISSN 0380-1330

Grant, L. J., Mikkelsen, D., Phan, A. D. T., Kang, S., Ouwerkerk, D., Klieve, A. V., Gidley, M. J. and Williams, B. A. (2020) Purified plant cell walls with adsorbed polyphenols alter porcine faecal bacterial communities during in vitro fermentation. Food & Function, 11 (1). pp. 834-845. ISSN 2042-6496

Loh, Z. H., Ouwerkerk, D., Klieve, A. V., Hungerford, N. L. and Fletcher, M. T. (2020) Toxin Degradation by Rumen Microorganisms: A Review. Toxins, 12 (10). ISSN 2072-6651

2019

Hernández-Restrepo, M., Bezerra, J., Tan, Y. P., Wiederhold, N., Crous, P., Guarro, J. and Gené, J. (2019) Re-evaluation of Mycoleptodiscus species and morphologically similar fungi. Persoonia, 42 . pp. 205-227. ISSN 0031-5850 (Print); 1878-9080 (Online)

2018

Dennis, P. G., Kukulies, T., Forstner, C., Orton, T. G. and Pattison, A. B. (2018) The effects of glyphosate, glufosinate, paraquat and paraquat-diquat on soil microbial activity and bacterial, archaeal and nematode diversity. Scientific Reports, 8 (1). p. 2119. ISSN 2045-2322

Seshadri, R., Leahy, S. C., Attwood, G. T., Teh, K. H., Lambie, S. C., Cookson, A. L., Eloe-Fadrosh, E. A., Pavlopoulos, G. A., Hadjithomas, M., Varghese, N. J., Paez-Espino, D., Perry, R., Henderson, G., Creevey, C. J., Terrapon, N., Lapebie, P., Drula, E., Lombard, V., Rubin, E., Kyrpides, N. C., Henrissat, B., Woyke, T., Ivanova, N. N., Kelly, W. J., Palevic, N., Janssen, P. H., Ronimus, R. S., Noel, S., Soni, P., Reilly, K., Atherly, T., Ziemer, C., Wright, A., Ishaq, S., Cotta, S., Thompson, S., Crosley, K., McKain, S., Wallace, R. J., Flint, H. J., Martin, J. C., Forster, R. J., Gruninger, R. J., McAllister, T., Gilbert, R. A., Ouwerkerk, D., Klieve, A., Jassim, R. A., Denman, S., McSweeney, C., Rosewarne, S., Koike, S., Kobayashi, Y., Mitsumori, M., Shinkai, T., Cravero, S. and Cerón Cucchi, T. (2018) Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnology, 36 (4). pp. 359-367.

2017

Le, D. P., Smith, M. K. and Aitken, E. A. B. (2017) Genetic variation in Pythium myriotylum based on SNP typing and development of a PCR-RFLP detection of isolates recovered from Pythium soft rot ginger. Letters in Applied Microbiology, 65 (4). pp. 319-326. ISSN 1472-765X

2015

Bickel, T. O. and Schooler, S. S. (2015) Effect of water quality and season on the population dynamics of Cabomba caroliniana in subtropical Queensland, Australia. Aquatic Botany, 123 . pp. 64-71.

2012

Field, H., Crameri, G., Kung, N. and Wang, L.-F. (2012) Ecological Aspects of Hendra Virus. In: Henipavirus Current Topics in Microbiology and Immunology. Current Topics in Microbiology and Immunology, 359 . Springer Berlin Heidelberg. ISBN 978-3-642-29818-9

2011

Attwood, G. T., Altermann, E., Kelly, W. J., Leahy, S. C., Zhang, L. and Morrison, M. (2011) Exploring rumen methanogen genomes to identify targets for methane mitigation strategies. Animal Feed Science and Technology, 166–16 . pp. 65-75. ISSN 0377-8401

Ouwerkerk, D., Gilbert, R. A. and Klieve, A. (2011) Archaeaphage therapy to control rumen methanogens. Project Report. Meat & Livestock Australia Limited.

2009

Chinivasagam, H.N. and Blackall, P. J. (2009) The re-use of water in agricultural settings. Microbiology Australia, 30 (1). pp. 38-39.

2008

Gilbert, R. A., Denman, S. E., Padmanabha, J., Fegan, N., Al Ajmi, D. and McSweeney, C. S. (2008) Effect of diet on the concentration of complex Shiga toxin-producing Escherichia coli and EHEC virulence genes in bovine faeces, hide and carcass. International Journal of Food Microbiology, 121 (2). pp. 208-216. ISSN 0168-1605

Milinovich, G.J., Burrell, P.C., Pollitt, C.C., Klieve, A.V., Blackall, L.L., Ouwerkerk, D., Woodland, E. and Trott, D.J. (2008) Microbial ecology of the equine hindgut during oligofructose-induced laminitis. ISME Journal, 2 (11). pp. 1089-1100.

2006

Al-Ajmi, D., Padmanabha, J., Denman, S.E., Gilbert, R. A., Al Jassim, R.A.M. and McSweeney, C.S. (2006) Evaluation of a PCR detection method for Escherichia coli O157:H7/H– bovine faecal samples. Letters in Applied Microbiology, 42 (4). pp. 386-391. ISSN 0266-8254

2005

Bettelheim, K.A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C.S. (2005) The diversity of Escherichia coli serotypes and biotypes in cattle faeces. Journal of Applied Microbiology, 98 (3). pp. 699-709. ISSN 1364-5072

Gilbert, R. A., Tomkins, N., Padmanabha, J., Gough, J.M., Krause, D.O. and McSweeney, C.S. (2005) Effect of finishing diets on Escherichia coli populations and prevalence of enterohaemorrhagic E. coli virulence genes in cattle faeces. Journal of Applied Microbiology, 99 (4). pp. 885-894. ISSN 1364-5072

Jackson, A.O., Dietzgen, R.G., Goodin, M.M., Bragg, J.N. and Deng, M. (2005) Biology of Plant Rhabdoviruses. Annual Review Phytopathology, 43 . pp. 623-660.

Klieve, A. V. (2005) Bacteriophages. In: Methods in Gut Microbial Ecology for Ruminants. Springer, 226 pages. ISBN 978-1-4020-3790-0

2004

Klieve, A.V., Bain, P.A., Yokoyama, M.T., Ouwerkerk, D., Foster, R.J. and Turner, A.F. (2004) Bacteriophages that infect the cellulolytic ruminal bacterium Ruminococcus albus AR67. Letters in Applied Microbiology, 38 (4). pp. 333-338.

2003

Bettelheim, K. A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C. S. (2003) The diversity of Escherichia coli serotypes and biotypes in cattle faeces and the effects of diet-induced changes. In: Microbiology: Art in Science, Joint Meeting of the Australian and New Zealand Societies for Microbiology, 28 September - 2 October 2003, Auckland, New Zealand.

Mackie, R.I., Aminov, R.I., Hu, W., Klieve, A.V., Ouwerkerk, D., Sundset, M.A. and Kamagata, Y. (2003) Ecology of uncultivated oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches. Applied and Environmental Microbiology, 69 (11). pp. 6808-6815.

Osman, A.M. (2003) Barley and malt proteins and proteinases: l. Highly degradable barley protein fraction (hdbpf), a suitable substrate for malt endoprotease assay. Journal of the Institute of Brewing, 109 (2). pp. 135-141.

Osman, A.M. (2003) Barley and malt proteins and proteinases: ll. The purification and characterisation of five malt endoproteases, using the highly degradable barley protein fraction (HDBPF) substrate. Journal of the Institute of Brewing, 109 (2). pp. 142-149.

Osman, A.M. (2003) Barley and malt proteins and proteinases: lll. A simple method for estimating the combined actions of malt proteinases and the extent of protein degradation during malting. Journal of the Institute of Brewing, 109 (2). pp. 150-153.

Osman, A.M., Coverdale, S.M., Onley-Watson, K., Bell, D. and Healy, P. (2003) The gel filtration chromatographic-profiles of proteins and peptides of wort and beer: Effects of processing - malting, mashing, kettle boiling, fermentation and filtering. Journal of the Institute of Brewing, 109 (1). pp. 41-50.

Reeson, A.F., Jankovic, T., Kasper, M.L., Rogers, S. and Austin, A.D. (2003) Application of 16S rDNA-DGGE to examine the microbial ecology associated with a social wasp Vespula germanica. Insect Molecular Biology, 12 (1). pp. 85-91.

2000

Gilbert, R. A., Klieve, A. V. and Nolan, J. V. (2000) Survival of phage particles in the rumen ecosystem. In: Australian Society for Microbiology Annual Scientific Meeting, 8-13 July 2000, Cairns, Queensland.

Thomas, R.J., Gardner, E.A., Barry, G.A., Chinivasagam, H.N., Green, P.E., Klieve, A.V., Blackall, P.J., Blight, G.W. and Blayney, B.J. (2000) Indicator organism levels in effluent from Queensland coastal STPS. Water, 27 . pp. 38-45.

1998

Attwood, G. T., Klieve, A. V., Ouwerkerk, D. and Patel, B. K. (1998) Ammonia-hyperproducing bacteria from New Zealand ruminants. Applied and environmental microbiology, 64 (5). pp. 1796-1804. ISSN 0099-22401098-5336

Oakey, J., Gibson, L. F. and George, A. M. (1998) Co-migration of RAPD-PCR amplicons fromAeromonas hydrophila. FEMS Microbiology Letters, 164 (1). pp. 35-38. ISSN 03781097

1996

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1996) Bacteriophages in the rumen: types present, population size and implications for the efficiency of feed utilisation. Proceedings of the Australian Society of Animal Production, 21 . pp. 92-94.

Swain, R. A., Klieve, A. V. and Nolan, J. V. (1996) Factors affecting the rumen bacteriophage population. Proceedings of the Australian Society of Animal Production, 21 . p. 409.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1996) Natural variability and diurnal fluctuations within the bacteriophage population of the rumen. Applied and Environmental Microbiology, 62 (3). pp. 994-997.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1996) Effect of tannic acid on the bacteriophage populations within sheep rumen. In: Microbiology Australia, International meeting and exhibition of the Australian and New Zealand societies for microbiology, Christchurch, New Zealand.

1995

O'Connor-Shaw, R.E., Guthrie, J.A., Dunlop, K.J. and Roberts, R. (1995) Coliforms in processed mango: Significance and control. International Journal of Food Microbiology, 25 (1). pp. 51-61.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Bryant 70th Symposium, Illinois, USA.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Australian Society for Microbiology Annual Scientific Meeting, 24-29 September 1995, Canberra, ACT, Australia..

1994

Guthrie, J.A., Dunlop, K.J. and Saunders, G.A. (1994) Use of Petrifilm(R) 3M to assess coliform numbers on lamb carcasses. Journal of Food Protection, 57 (10). pp. 924-927.

1993

Klieve, A. V. and Swain, R. A. (1993) Estimation of ruminal bacteriophage numbers by pulsed-field gel electrophoresis and laser densitometry. Applied and Environmental Microbiology, 59 (7). pp. 2299-2303.

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1993) Natural variability and diurnal fluctuation of bacteriophage populations in the rumen. In: 22nd Biennial Conference on Rumen Function, November 9-11, 1993, Chicago, USA.