Items where Subject is "Microorganisms in the animal body"

A

Agnihotri, K., Oakey, J., Smith, C. S., Weir, R., Pyke, A. and Melville, L. (2021) Genome-scale molecular and phylogenetic characterization of Middle Point orbiviruses from Australia. Journal of General Virology, 102 (12). https://doi.org/10.1099/jgv.0.001685

Al-Ajmi, D., Padmanabha, J., Denman, S.E., Gilbert, R. A., Al Jassim, R.A.M. and McSweeney, C.S. (2006) Evaluation of a PCR detection method for Escherichia coli O157:H7/H– bovine faecal samples. Letters in Applied Microbiology, 42 (4). pp. 386-391. https://doi.org/10.1111/j.1472-765X.2005.01850.x

B

Bajagai, Y. S., Yeoh, Y. K., Li, X., Zhang, D., Dennis, P. G., Ouwerkerk, D., Dart, P. J., Klieve, A. V. and Bryden, W. L. (2023) Enhanced meat chicken productivity in response to the probiotic Bacillus amyloliquefaciens H57 is associated with the enrichment of microbial amino acid and vitamin biosynthesis pathways. Journal of Applied Microbiology, 134 (5), lxad085. https://doi.org/10.1093/jambio/lxad085

Barrett, J. L., Carlisle, M.S. and Prociv, P. (2002) Neuro-angiostrongylosis in wild Black and Grey-headed flying foxes (Pteropus spp). Australian Veterinary Journal, 80 (9). pp. 554-558. https://doi.org/10.1111/j.1751-0813.2002.tb11039.x

Bettelheim, K.A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C.S. (2005) The diversity of Escherichia coli serotypes and biotypes in cattle faeces. Journal of Applied Microbiology, 98 (3). pp. 699-709. https://doi.org/10.1111/j.1365-2672.2004.02501.x

Bettelheim, K. A., Kuzevski, A., Gilbert, R. A., Krause, D.O. and McSweeney, C. S. (2003) The diversity of Escherichia coli serotypes and biotypes in cattle faeces and the effects of diet-induced changes. In: Microbiology: Art in Science, Joint Meeting of the Australian and New Zealand Societies for Microbiology, 28 September - 2 October 2003, Auckland, New Zealand.

Blackall, P.J., O'Dell, R. and Stephens, C.P. (1993) In vitro antibacterial properties of tilmicosin against isolates of Histophilus somni from Australian cattle. Australian Veterinary Journal, 70 (10). pp. 391-392. https://doi.org/10.1111/j.1751-0813.1993.tb00824.x

Bowen, M. K. (2003) Efficiency of microbial protein production in cattle grazing tropical pastures. PhD thesis, University of Queensland, 315 pages.

Browne, D. J., Miller, C. M., O'Hara, E. P., Courtney, R., Seymour, J., Doolan, D. L. and Orr, R. (2024) Optimization and application of bacterial environmental DNA and RNA isolation for qualitative and quantitative studies. Environmental DNA, 6 (4). e589. https://doi.org/10.1002/edn3.589

Burow, L.C., Gobius, K.S., Vanselow, B.A. and Klieve, A.V. (2005) A lack of predatory interaction between rumen ciliate protozoa and Shiga-toxin producing Escherichia coli. Letters in Applied Microbiology, 40 . pp. 117-122. https://doi.org/10.1111/j.1472-765X.2004.01642.x

C

Campbell, B. E., Hassan, M. M., Moore, R. J., Olchowy, T., Soust, M., Al Jassim, R. and Alawneh, J. I. (2025) Temporal changes in ruminal microbiota composition and diversity in dairy cows supplemented with a lactobacilli-based DFM. Frontiers in Veterinary Science, 12 . https://doi.org/10.3389/fvets.2025.1584959

Chinivasagam, H.N., Bremner, H.A. and Reeves, R.K.H. (1998) Can spoilage bacteria cause blackspot (melanosis) in stored prawns? Letters in Applied Microbiology, 27 (1). pp. 5-8. https://doi.org/10.1046/j.1472-765X.1998.00373.x

Chinivasagam, H.N., Estella, W., Cockerill, S. A., Maddock, L., Mayer, D. G., Billington, C., Premaratne, A., Liang, L., Connerton, P. L. and Connerton, I. F. (2020) Moving from concept to control; use of phages for Campylobacter reduction. Project Report. AgriFutures.

D

Dixon, R. M. and Mayer, R. J. (2022) Availability to ruminants of nitrogen in senesced C4 tropical grasses. Animal Production Science, 63 (3). pp. 269-278. https://doi.org/10.1071/AN22197

E

Easton, D. M., Totsika, M., Allsopp, L. P., Phan, M. D., Idris, A., Wurpel, D. J., Sherlock, O., Venturini, C., Beatson, S. A., Mahony, T. J., Cobbold, R. N., Schembri, M. A. and Zhang, B. (2011) Characterization of EhaJ, a New Autotransporter Protein from Enterohemorrhagic and Enteropathogenic Escherichia coli. Frontiers in Microbiology, 2 . p. 120. https://doi.org/10.3389/fmicb.2011.00120

F

Fatima, G., Omaleki, L., Lobo, E., Kayal, A., Ambrose, R. K., Briody, T. E., Mahony, T. J. and Turni, C. (2025) Development of multiplex Luminex assays for the surveillance of antimicrobial resistance genes in nasal samples. Journal of Microbiological Methods, 237 . p. 107234. https://doi.org/10.1016/j.mimet.2025.107234

G

Gilbert, R. A. (2023) Pyramidobacter sp. strain YE332 genome sequencing. State of Queensland.

Gilbert, R. A., Davis, C., Gravel, J. L. and Ouwerkerk, D. (2024) Genome sequence and annotation of Pyramidobacter sp. strain YE332, isolated from a cattle rumen fermentation of Leucaena leaf. Microbiology Resource Announcements, 13 (4), e0101223. https://doi.org/10.1128/mra.01012-23

Gilbert, R. A., Denman, S. E., Padmanabha, J., Fegan, N., Al Ajmi, D. and McSweeney, C. S. (2008) Effect of diet on the concentration of complex Shiga toxin-producing Escherichia coli and EHEC virulence genes in bovine faeces, hide and carcass. International Journal of Food Microbiology, 121 (2). pp. 208-216. https://doi.org/10.1016/j.ijfoodmicro.2007.11.019

Gilbert, R. A., Klieve, A. V. and Nolan, J. V. (2000) Survival of phage particles in the rumen ecosystem. In: Australian Society for Microbiology Annual Scientific Meeting, 8-13 July 2000, Cairns, Queensland.

Gilbert, R. A. and Ouwerkerk, D. (2020) Ruminal viruses and extrachromosomal genetic elements. In: Rumen Microbiology: From Evolution to Revolution. Burleigh Dodds Series in Agricultural Science (83). Burleigh Dodds. https://doi.org/10.19103/AS.2020.0067.10

Gilbert, R. A., Ouwerkerk, D. and Klieve, A. V. (2015) Modulation of the rumen microbiome. Microbiology Australia, 36 (1). p. 18. https://doi.org/10.1071/MA15006

Gilbert, R. A., Tomkins, N., Padmanabha, J., Gough, J.M., Krause, D.O. and McSweeney, C.S. (2005) Effect of finishing diets on Escherichia coli populations and prevalence of enterohaemorrhagic E. coli virulence genes in cattle faeces. Journal of Applied Microbiology, 99 (4). pp. 885-894. https://doi.org/10.1111/j.1365-2672.2005.02670.x

Goulden, E. F., Høj, L. and Hall, M.R. (2013) Microbial management for bacterial pathogen control in invertebrate aquaculture hatcheries. In: Advances in Aquaculture Hatchery Technology. Elsevier, 40 pages. https://doi.org/10.1533/9780857097460.1.246

Grant, L. J., Mikkelsen, D., Phan, A. D. T., Kang, S., Ouwerkerk, D., Klieve, A. V., Gidley, M. J. and Williams, B. A. (2020) Purified plant cell walls with adsorbed polyphenols alter porcine faecal bacterial communities during in vitro fermentation. Food & Function, 11 (1). pp. 834-845. https://doi.org/10.1039/C9FO02428J

Gulino, L.M., Ouwerkerk, D., Kang, A.Y.H., Maguire, A. J., Kienzle, M. and Klieve, A.V. (2013) Shedding Light on the Microbial Community of the Macropod Foregut Using 454-Amplicon Pyrosequencing. Plos One, 8 (4). https://doi.org/10.1371/journal.pone.0061463

Guo, S., Wakeham, D., Brouwers, H. J. M., Cobbold, R. N., Abraham, S., Mollinger, J. L., Johnson, J. R., Chapman, T. A., Gordon, D. M., Barrs, V. R. and Trott, D. J. (2015) Human-associated fluoroquinolone-resistant Escherichia coli clonal lineages, including ST354, isolated from canine feces and extraintestinal infections in Australia. Microbes and Infection, 17 (4). pp. 266-274. https://doi.org/10.1016/j.micinf.2014.12.016

H

Hau, E. E. R., Sly, P. D., Mikkelsen, D., Taneja, N., Penjor, K., Ryu, S., Donner, E., Mollinger, J. L., Ferreira, J. P., Schipp, M. and Soares Magalhaes, R. J. (2024) Design characteristics of integrated surveillance of antimicrobial resistance at the human, animal, and environment interfaces. CABI Reviews, 19 (1). https://doi.org/10.1079/cabireviews.2024.0047

Horyanto, D., Bajagai, Y. S., von Hellens, J., Chen, X., Thi Thu Hao, T. T. H., Dunlop, M. W. and Stanley, D. (2024) The Association between Broiler Litter Microbiota and the Supplementation of Bacillus Probiotics in a Leaky Gut Model. Animals, 14 (12). https://doi.org/10.3390/ani14121758

J

Joachimsthal, E.L., Reeves, R.K.H., Hung, J., Nielsen, L. K., Ouwerkerk, D., Klieve, A. V. and Vickers, C.E. (2010) Production of bacteriocins by Streptococcus bovis strains from Australian ruminants. Journal of Applied Microbiology, 108 (2). pp. 428-436. https://doi.org/10.1111/j.1365-2672.2009.04432.x

K

Kidsley, A. K., White, R. T., Beatson, S. A., Saputra, S., Schembri, M. A., Gordon, D., Johnson, J. R., O’Dea, M., Mollinger, J. L., Abraham, S. and Trott, D. J. (2020) Companion Animals Are Spillover Hosts of the Multidrug-Resistant Human Extraintestinal Escherichia coli Pandemic Clones ST131 and ST1193. Frontiers in Microbiology, 11 (1968). https://doi.org/10.3389/fmicb.2020.01968

Klieve, A. V. and Gilbert, R. A. (2005) Bacteriophage populations. In: Methods in Gut Microbial Ecology for Ruminants. Springer. https://doi.org/10.1007/1-4020-3791-0_10

Klieve, A. V. and Swain, R. A. (1993) Estimation of ruminal bacteriophage numbers by pulsed-field gel electrophoresis and laser densitometry. Applied and Environmental Microbiology, 59 (7). pp. 2299-2303. https://doi.org/10.1128/aem.59.7.2299-2303.1993

Klieve, A. V. (2005) Bacteriophages. In: Methods in Gut Microbial Ecology for Ruminants. Springer, 226 pages.

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1996) Bacteriophages in the rumen: types present, population size and implications for the efficiency of feed utilisation. Proceedings of the Australian Society of Animal Production, 21 . pp. 92-94.

Klieve, A. V., Swain, R. A. and Nolan, J. V. (1993) Natural variability and diurnal fluctuation of bacteriophage populations in the rumen. In: 22nd Biennial Conference on Rumen Function, November 9-11, 1993, Chicago, USA.

L

Lancashire, J. F., Terry, T. D., Blackall, P. J. and Jennings, M. P. (2005) Plasmid-encoded Tet B tetracycline resistance in Haemophilus parasuis. Antimicrobial agents and chemotherapy, 49 (5). pp. 1927-1931. https://doi.org/10.1128/AAC.49.5.1927-1931.2005

Lazarus, B., Paterson, D. L., Mollinger, J. L. and Rogers, B. A. (2015) Do Human Extraintestinal Escherichia coli Infections Resistant to Expanded-Spectrum Cephalosporins Originate From Food-Producing Animals? A Systematic Review. Clinical Infectious Diseases, 60 (3). p. 439. https://doi.org/10.1093/cid/ciu785

Lewis, R. J., Nielsen, K. J., Craik, D. J., Loughnan, M. L., Adams, D. A., Sharpe, I. A., Luchian, T., Adams, D. J., Bond, T., Thomas, L., Jones, A., Matheson, J. L., Drinkwater, R., Andrews, P. R. and Alewood, P. F. (2000) Novel omega-conotoxins from Conus catus discriminate among neuronal calcium channel subtypes. Journal of biological chemistry, 275 (45). pp. 35335-44. https://doi.org/10.1074/jbc.M002252200

Loh, Z. H., Hungerford, N. L., Ouwerkerk, D., Klieve, A. V. and Fletcher, M. T. (2025) Abiotic Degradation of the Toxin Simplexin by Soil Collected from a Pimelea-Infested Paddock. Toxins, 17 (3). p. 124. https://doi.org/10.3390/toxins17030124

Loh, Z. H., Ouwerkerk, D., Klieve, A. V., Hungerford, N. L. and Fletcher, M. T. (2020) Toxin Degradation by Rumen Microorganisms: A Review. Toxins, 12 (10). https://doi.org/10.3390/toxins12100664

O

Ooi, M. C., Goulden, E. F., Smith, G. G. and Bridle, A. R. (2019) Haemolymph microbiome of the cultured spiny lobster Panulirus ornatus at different temperatures. Scientific Reports, 9 (1). https://doi.org/10.1038/s41598-019-39149-7

Ooi, M. C., Goulden, E. F., Smith, G. G., Nowak, B. F. and Bridle, A. R. (2017) Developmental and gut-related changes to microbiomes of the cultured juvenile spiny lobster Panulirus ornatus. FEMS Microbiology Ecology, 93 (12). https://doi.org/10.1093/femsec/fix159

Ooi, M. C., Goulden, E. F., Smith, G. G. and Bridle, A. R. (2021) Predatory bacteria in the haemolymph of the cultured spiny lobster Panulirus ornatus. Microbiology, 167 (11). https://doi.org/10.1099/mic.0.001113

Ouwerkerk, D., Gilbert, R. A. and Klieve, A. (2011) Archaeaphage therapy to control rumen methanogens. Project Report. Meat & Livestock Australia Limited.

P

Premaratne, A., Zhang, H., Wang, R., Chinivasagam, H.N. and Billington, C. (2021) Phage Biotechnology to Mitigate Antimicrobial Resistance in Agriculture. In: Sustainable Agriculture Reviews 49: Mitigation of Antimicrobial Resistance Vol 2. Natural and Synthetic Approaches. Springer International Publishing, Cham. https://doi.org/10.1007/978-3-030-58259-3_9

R

Roy Chowdhury, P., Alhamami, T., Venter, H., Veltman, T., Carr, M., Mollinger, J. L., Trott, D. J. and Djordjevic, S. P. (2024) Identification and evolution of ICE-PmuST394: a novel integrative conjugative element in Pasteurella multocida ST394. Journal of Antimicrobial Chemotherapy . https://doi.org/10.1093/jac/dkae040

S

Seshadri, R., Leahy, S. C., Attwood, G. T., Teh, K. H., Lambie, S. C., Cookson, A. L., Eloe-Fadrosh, E. A., Pavlopoulos, G. A., Hadjithomas, M., Varghese, N. J., Paez-Espino, D., Perry, R., Henderson, G., Creevey, C. J., Terrapon, N., Lapebie, P., Drula, E., Lombard, V., Rubin, E., Kyrpides, N. C., Henrissat, B., Woyke, T., Ivanova, N. N., Kelly, W. J., Palevic, N., Janssen, P. H., Ronimus, R. S., Noel, S., Soni, P., Reilly, K., Atherly, T., Ziemer, C., Wright, A., Ishaq, S., Cotta, S., Thompson, S., Crosley, K., McKain, S., Wallace, R. J., Flint, H. J., Martin, J. C., Forster, R. J., Gruninger, R. J., McAllister, T., Gilbert, R. A., Ouwerkerk, D., Klieve, A., Jassim, R. A., Denman, S., McSweeney, C., Rosewarne, S., Koike, S., Kobayashi, Y., Mitsumori, M., Shinkai, T., Cravero, S. and Cerón Cucchi, T. (2018) Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnology, 36 (4). pp. 359-367. https://doi.org/10.1038/nbt.4110

Speare, R. and Thomas, A.D. (1988) Orphaned kangaroo and wallaby joeys as a potential zoonotic source of Salmonella spp. The Medical Journal of Australia, 148 . pp. 619-623.

Stephens, C. P. and Hampson, D. J. (2002) Experimental infection of broiler breeder hens with the intestinal spirochaete Brachyspira ( Serpulina ) pilosicoli causes reduced egg production. Avian Pathology, 31 (2). pp. 169-175. https://doi.org/10.1080/03079450120118667

Sun, X., Blackall, P. J., Daniel, P., Chandra, K., Jenkin, S. and Turni, C. (2021) An improved multiplex PCR for Actinobacillus pleuropneumoniae, Glaesserella australis and Pasteurella multocida. Journal of Microbiological Methods, 191 . p. 106360. https://doi.org/10.1016/j.mimet.2021.106360

Swain, R. A., Klieve, A. V. and Nolan, J. V. (1996) Factors affecting the rumen bacteriophage population. Proceedings of the Australian Society of Animal Production, 21 . p. 409.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1996) Natural variability and diurnal fluctuations within the bacteriophage population of the rumen. Applied and Environmental Microbiology, 62 (3). pp. 994-997. https://doi.org/10.1128/aem.62.3.994-997.1996

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1996) Effect of tannic acid on the bacteriophage populations within sheep rumen. In: Microbiology Australia, International meeting and exhibition of the Australian and New Zealand societies for microbiology, Christchurch, New Zealand.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Bryant 70th Symposium, Illinois, USA.

Swain, R. A., Nolan, J. V. and Klieve, A. V. (1995) Tannic acid reduces bacteriophage numbers in rumen bacterial cultures. In: Australian Society for Microbiology Annual Scientific Meeting, 24-29 September 1995, Canberra, ACT, Australia..

T

Tanzin, A. Z., Nath, C., Nayem, M. R. K., Sayeed, M. A., Khan, S. A., Magalhaes, R. S., Alawneh, J. I. and Hassan, M. M. (2024) Detection and Characterisation of Colistin-Resistant Escherichia coli in Broiler Meats. Microorganisms, 12 (12). p. 2535. https://doi.org/10.3390/microorganisms12122535

Templeton, J. M., Botella, J.R. and Blackall, P. J. (2022) Are point of management assays relevant for food safety in the poultry industries? Microbiology Australia, 43 (2). pp. 67-70. https://doi.org/10.1071/MA22025

Torok, V. A., Hughes, R. J., Mikkelsen, L. L., Perez-Maldonado, R., Balding, K., MacAlpine, R., Percy, N. J. and Ophel-Keller, K. (2011) Identification and Characterization of Potential Performance-Related Gut Microbiotas in Broiler Chickens across Various Feeding Trials. Applied and Environmental Microbiology, 77 (17). pp. 5868-5878. https://doi.org/10.1128/AEM.00165-11

W

White, R. T., Ashcroft, M. M., Bauer, M. J., Bell, J., Butkiewicz, D., Alvarez-Fraga, L., Gibson, J. S., Kidsley, A. K., Mollinger, J. L., Peters, K. M., Phan, M.-D., Roberts, L. W., Rogers, B. A., Schembri, M. A., Trott, D. J., Turnidge, J., Forde, B. M. and Beatson, S. A. (2024) The complete genome sequence of five pre-2013 Escherichia coli sequence type (ST)1193 strains reveals insights into an emerging pathogen. Access Microbiology, 6 (10). https://doi.org/10.1099/acmi.0.000894.v3

Y

Yuan, Y., Gauthier, E., Ouwerkerk, D., Fletcher, M. T. and Laycock, B. (2022) Unravelling biodegradation and toxin release kinetics of poly(3-hydroxybutyrate-co-3-hydroxyvalerate)-based biocomposites in a simulated rumen environment: A preliminary study. Sustainable Materials and Technologies, 33 . e00498. https://doi.org/10.1016/j.susmat.2022.e00498

Z

Zeng, T., Hassan, B., Shakeel, M., Cheng, D., Riegler, M., Yang, F., Xiao, Q., Jiang, Q., Chen, S. and Ning, D. (2024) Adaptation to host plants modulates the dependence of tephritid fruit flies on their gut bacterial communities. Entomologia Generalis, 44 (4). https://doi.org/10.1127/entomologia/2024/2290

Zerna, G., Rathinasamy, V. A., Toet, H., Anderson, G. R., Dempster, R., Spithill, T. W. and Beddoe, T. (2021) Evaluation of Immunogenicity and Efficacy of Fasciola hepatica Tetraspanin 2 (TSP2) Fused to E. coli Heat-Labile Enterotoxin B Subunit LTB Adjuvant Following Intranasal Vaccination of Cattle. Vaccines, 9 (11). p. 1213. https://doi.org/10.3390/vaccines91112

Zhou, Y., Roseli, R. B., Hungerford, N. L., Fletcher, M. T., Ouwerkerk, D., Gilbert, R. A. and Krenske, E. H. (2024) Binding of the plant-derived toxin simplexin to bovine protein kinase C: insights from molecular dynamics. Organic & Biomolecular Chemistry, 22 (14). pp. 2863-2876. https://doi.org/10.1039/D4OB00065J