Items where Author is "Thomas, John E."

Article

Rubino, L., Abrahamian, P., An, W., Aranda, M. A., Ascencio-Ibañez, J. T., Bejerman, N., Blouin, A. G., Candresse, T., Canto, T., Cao, M., Carr, J. P., Cho, W. K., Constable, F., Dasgupta, I., Debat, H., Dietzgen, R. G., Digiaro, M., Donaire, L., Elbeaino, T., Fargette, D., Filardo, F. F., Fischer, M. G., Fontdevila, N., Fox, A., Freitas-Astua, J., Fuchs, M., Geering, A. D.W., Ghafari, M., Hafrén, A., Hammond, J., Hammond, R., Hasiów-Jaroszewska, B., Hebrard, E., Hernández, C., Hily, J.-M., Hosseini, A., Hull, R., Inoue-Nagata, A. K., Jordan, R., Kondo, H., Kreuze, J. F., Krupovic, M., Kubota, K., Kuhn, J. H., Leisner, S., Lett, J.-M., Li, C., Li, F., Li, J. M., López-Lambertini, P. M., Lopez-Moya, J. J., Maclot, F., Mäkinen, K., Martin, D., Massart, S., Miller, W. A., Mohammadi, M., Mollov, D., Muller, E., Nagata, T., Navas-Castillo, J., Neriya, Y., Ochoa-Corona, F. M., Ohshima, K., Pallás, V., Pappu, H., Petrzik, K., Pooggin, M., Prigigallo, M. I., Ramos-González, P. L., Ribeiro, S., Richert-Pöggeler, K. R., Roumagnac, P., Roy, A., Sabanadzovic, S., Safářová, D., Saldarelli, P., Sanfaçon, H., Sarmiento, C., Sasaya, T., Scheets, K., Schravesande, W. E.W., Seal, S., Shimomoto, Y., Sõmera, M., Stavolone, L., Stewart, L. R., Teycheney, P.-Y., Thomas, J. E., Thompson, J. R., Tiberini, A., Tomitaka, Y., Tzanetakis, I., Umber, M., Urbino, C., van den Burg, H. A., Van der Vlugt, R. A.A., Varsani, A., Verhage, A., Villamor, D., von Bargen, S., Walker, P. J., Wetzel, T., Whitfield, A. E., Wylie, S. J., Yang, C., Zerbini, F. M. and Zhang, S. (2025) Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses from the Plant Viruses Subcommittee, 2025. Journal of General Virology, 106 (7). https://doi.org/10.1099/jgv.0.002114

Thomas, J. E., Jackson, M., Campbell, P. R., Tran, N. T. and Geering, A. D. W. (2025) The complete genome sequence of a novel legume closterovirus from Norfolk Island. Australasian Plant Pathology, 54 . pp. 131-135. https://doi.org/10.1007/s13313-025-01023-8

Nurulita, S., Geering, A. D. W., Crew, K. S., Harper, S. and Thomas, J. E. (2024) First report of iris yellow spot virus infecting shallot (Allium cepa var. aggregatum) in Australia. Australasian Plant Pathology, 53 . pp. 593-596. https://doi.org/10.1007/s13313-024-00999-z

Tran, N. T., Teo, A. C., Crew, K. S., Thomas, J. E., Campbell, P. R. and Geering, A. D. W. (2022) Bermuda grass latent virus in Australia: genome sequence, sequence variation, and new hosts. Archives of Virology, 167 (5). pp. 1317-1323. https://doi.org/10.1007/s00705-022-05434-6

Nurulita, S., Geering, A. D. W., Crew, K. S., Harper, S. M. and Thomas, J. E. (2022) Detection of two poleroviruses infecting garlic (Allium sativum) in Australia. Australasian Plant Pathology, 51 . pp. 461-465. https://doi.org/10.1007/s13313-022-00870-z

Chittarath, K., Crew, K. S., Geering, A. D. W., Rungsawang, W., Kong, G., Pongsapich, P. and Thomas, J. E. (2022) Presence and distribution of banana bunchy top virus in Laos. Australasian Plant Disease Notes, 17 (1). p. 36. https://doi.org/10.1007/s13314-022-00482-y

Thomas, J. E., Raymond, M., Tran, N. T., Crew, K. S., Teo, A. C. and Geering, A. D. W. (2021) Complete genome sequences and properties of Spartina mottle virus isolates from hybrid Bermuda grass (Cynodon dactylon × Cynodon transvaalensis). Plant Pathology, 70 (5). pp. 1062-1071. https://doi.org/10.1111/ppa.13357

Cremer, J. E., Campbell, P. R., Steele, V., Persley, D. M., Thomas, J. E., Harper, S. and Gambley, C. (2021) Detection and Distribution of Viruses Infecting Garlic Crops in Australia. Plants, 10 (5). https://doi.org/10.3390/plants10051013

Tran, N. T., Teo, A. C., Crew, K. S., Campbell, P. R., Thomas, J. E. and Geering, A. D. W. (2021) Genome sequence and geographic distribution of a new nepovirus infecting Stenotaphrum secundatum in Australia. Virus Research, 305 . p. 198554. https://doi.org/10.1016/j.virusres.2021.198554

Rahayuniati, R. F., Subandiyah, S., Hartono, S., Somowiyarjo, S., Kurniawan, R. E. K., Prakoso, A. B., Crew, K. S., Vance, M. E., Ray, J. D. and Thomas, J. E. (2021) Recent distribution and diversity analysis on banana bunchy top virus of banana and alternative host in Indonesia. Tropical Plant Pathology . https://doi.org/10.1007/s40858-021-00443-3

Nurulita, S., Geering, A. D. W., Crew, K. S., Harper, S. and Thomas, J. E. (2020) First report of garlic virus E in Australia. Australasian Plant Disease Notes, 15 (1). p. 32. https://doi.org/10.1007/s13314-020-00400-0

Ngo, B. T. H., Webb, R., Crew, K. S., Vance, M. E., Thomas, J. E. and Geering, A. D. W. (2020) Identification of putative viroplasms within banana cells infected by banana streak MY virus. Journal of General Virology, 101 (12). pp. 1305-1312. https://doi.org/10.1099/jgv.0.001498

Tran, N. T., Teo, A. C., Thomas, J. E., Crew, K. S. and Geering, A. D. W. (2020) Sugarcane mosaic virus infects Stenotaphrum secundatum in Australia. Australasian Plant Disease Notes, 15 (1). p. 41. https://doi.org/10.1007/s13314-020-00410-y

Filardo, F. F., Thomas, J. E., Webb, M. and Sharman, M. (2019) Faba bean polerovirus 1 (FBPV-1); a new polerovirus infecting legume crops in Australia. Archives of Virology, 164 (7). pp. 1915-1921. https://doi.org/10.1007/s00705-019-04233-w

Gambley, C., Persley, D. M. and Thomas, J. E. (2019) First record of Ranunculus white mottle virus from Australia. New Disease Reports, 40 . p. 13. https://doi.org/10.5197/j.2044-0588.2019.040.013

Chittarath, K., Mostert, D., Crew, K. S., Viljoen, A., Kong, G., Molina, G. and Thomas, J. E. (2018) First report of Fusarium oxysporum f. sp. cubense tropical race 4 (VCG 01213/16) associated with Cavendish bananas in Laos. Plant Disease, 102 (2). p. 449. https://doi.org/10.1094/PDIS-08-17-1197-PDN

De Clerck, C., Crew, K. S., Van den houwe, I., McMichael, L., Berhal, C., Lassois, L., Haissam Jijakli, M., Roux, N., Thomas, J. E. and Massart, S. (2017) Lessons learned from the virus indexing of Musa germplasm: insights from a multiyear collaboration. Annals of Applied Biology, 171 (1). pp. 15-27. https://doi.org/10.1111/aab.12353

Parkinson, L. E., Crew, K. S., Thomas, J. E. and Dann, E. K. (2015) Efficacy of acibenzolar-S-methyl (Bion®) treatment of Australian commercial passionfruit, Passiflora edulis f. sp. flavicarpa, on resistance to Passionfruit woodiness virus (PWV) and activities of chitinase & β-1,3-glucanase. Australasian Plant Pathology, 44 (3). pp. 311-318. https://doi.org/10.1007/s13313-015-0349-4

Kraberger, S., Kumari, S. G., Hamed, A. A., Gronenborn, B., Thomas, J. E., Sharman, M., Harkins, G. W., Muhire, B. M., Martin, D. P. and Varsani, A. (2015) Molecular diversity of Chickpea chlorotic dwarf virus in Sudan: High rates of intra-species recombination – a driving force in the emergence of new strains. Infection, Genetics and Evolution, 29 . pp. 203-215. https://doi.org/10.1016/j.meegid.2014.11.024

Stainton, D., Martin, D. P., Muhire, B. M., Lolohea, S., Lepoint, P., Blomme, G., Crew, K. S., Sharman, M., Kraberger, S., Dayaram, A., Walters, M., Collings, D. A., Mabvakure, B., Lemey, P., Harkins, G. W., Thomas, J. E. and Varsani, A. (2015) The global distribution of Banana bunchy top virus reveals little evidence for frequent recent, human-mediated long distance dispersal events. Virus Evolution, 1 (1). vev009. https://doi.org/10.1093/ve/vev009

Kraberger, S., Harkins, G. W., Kumari, S. G., Thomas, J. E., Schwinghamer, M. W., Sharman, M., Collings, D. A., Briddon, R. W., Martin, D. P. and Varsani, A. (2013) Evidence that dicot-infecting mastreviruses are particularly prone to inter-species recombination and have likely been circulating in Australia for longer than in Africa and the Middle East. Virology, 444 (1-2). pp. 282-291. https://doi.org/10.1016/j.virol.2013.06.024

Geering, A. D. W., Parry, J. N. and Thomas, J. E. (2011) Complete genome sequence of a novel badnavirus, banana streak IM virus. Archives of Virology, 156 (4). pp. 733-737. https://doi.org/10.1007/s00705-011-0946-7

Van Brunschot, S. L., Persley, D. M., Geering, A. D. W., Campbell, P. R. and Thomas, J. E. (2010) Tomato yellow leaf curl virus in Australia: distribution, detection and discovery of naturally occurring defective DNA molecules. Australasian Plant Pathology, 39 (5). pp. 412-423. https://doi.org/10.1071/AP10083

Gambley, C., Miles, A. K., Ramsden, M., Doogan, V.J., Thomas, J. E., Parmenter, K. S. and Whittle, P.J.L. (2009) The distribution and spread of citrus canker in Emerald, Australia. Australasian Plant Pathology, 38 (6). pp. 547-557. https://doi.org/10.1071/AP09043

Gambley, C., Geering, A.D.W. and Thomas, J. E. (2009) Development of an immunomagnetic capture-reverse transcriptase-PCR assay for three pineapple ampeloviruses. Journal of Virological Methods, 155 (2). pp. 187-192. https://doi.org/10.1016/j.jviromet.2008.10.006

Harper, G., Hart, D., Moult, S., Hull, R., Geering, A. D. W. and Thomas, J. E. (2005) The diversity of Banana streak virus isolates in Uganda. Archives of Virology, 150 . pp. 2407-2420. https://doi.org/10.1007/s00705-005-0610-1

Geering, A. D. W., Pooggin, M.M., Olszewski, N.E., Lockhart, B.E.L. and Thomas, J. E. (2005) Characterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa. Archives of Virology, 150 . pp. 787-796. https://doi.org/10.1007/s00705-004-0471-z

van Rijswijk, B., Rodoni, B.C., Revill, P.A., Thomas, J. E., Morall, J.R. and Harding, R. M. (2004) Analysis of variability in partial sequences of genomes of Tobacco yellow dwarf virus isolates. Australasian Plant Pathology, 33 . pp. 367-370. https://doi.org/10.1071/AP04023

Gambley, C., Thomas, J. E., Magnaye, L.V. and Herradura, L. (2004) Abacá mosaic virus: a distinct strain of Sugarcane mosaic virus. Australasian Plant Pathology, 33 (4). pp. 475-484. https://doi.org/10.1071/AP04050

Parry, J.N., Davis, R.I. and Thomas, J. E. (2004) Passiflora virus Y, a novel virus infecting Passiflora spp. in Australia and the Indonesian Province of Papua. Australasian Plant Pathology, 33 . pp. 423-427. https://doi.org/10.1071/AP04042

Davis, R.I., Thomas, J. E., McMichael, L. A., Dietzgen, R. G., Callaghan, B., James, A. P., Gumia, T.G. and Rahamma, S. (2002) Plant virus surveys on the island of New Guinea and adjacent regions of northern Australia. Australasian Plant Pathology, 31 . pp. 385-390. https://doi.org/10.1071/AP02047

McMichael, L. A., Persley, D. M. and Thomas, J. E. (2002) A new tospovirus serogroup IV species infecting capsicum and tomato in Queensland, Australia. Australasian Plant Pathology, 31 . pp. 231-239. https://doi.org/10.1071/AP02016

Gambley, C. and Thomas, J. E. (2001) Molecular characterisation of Banana mild mosaic virus, a new filamentous virus in Musa spp. Archives of Virology, 146 . pp. 1369-1379. https://doi.org/10.1007/s007050170097

McMichael, L. A., Persley, D. M. and Thomas, J. E. (2000) The first record of a serotype IV tospovirus in Australia. Australasian Plant Pathology, 29 . p. 149. https://doi.org/10.1071/AP00023

Shaman, M., Gambley, C., Oloteo, E.O., Abgona, R.V.J. and Thomas, J. E. (2000) First record of natural infection of abaca (Musa textilis) with banana bract mosaic potyvirus in the Philippines. Australasian Plant Pathology, 29 . p. 69. https://doi.org/10.1071/AP00012

Thomas, J. E. and Dodman, R.L. (1999) The first record of bamboo mosaic potexvirus from Australia. Australasian Plant Pathology, 28 . p. 337. https://doi.org/10.1071/AP99054

Geering, A. D. W. and Thomas, J. E. (1999) Characterisation of a virus from Australia that is closely related to papaya mosaic potexvirus. Archives of Virology, 144 . pp. 577-592. https://doi.org/10.1007/s007050050526

Daniells, J. W., Geering, A. D.W. and Thomas, J. E. (1998) Banana streak virus investigations in Australia. Infomusa, 7 (2). pp. 20-21.

Thomson, K. G., Thomas, J. E. and Dietzgen, R. G. (1998) Retrotransposon-like sequences integrated into the genome of pineapple, Ananas comosus. Plant Molecular Biology, 38 . pp. 461-465. https://doi.org/10.1023/A:1006083200299

Thomas, J. E., Geering, A. D. W., Gambley, C., Kessling, A.F. and White, M. (1997) Purification, properties, and diagnosis of banana bract mosaic potyvirus and its distinction from abaca mosaic potyvirus. Phytopathology, 87 (7). pp. 698-705. https://doi.org/10.1094/PHYTO.1997.87.7.698

Geering, A. D. W. and Thomas, J. E. (1997) Search for alternative hosts of banana bunchy top virus in Australia. Australasian Plant Pathology, 26 . pp. 250-254. https://doi.org/10.1071/AP97040

Thomas, J. E., Smith, M. K., Kessling, A.F. and Hamill, S. D. (1995) Inconsistent Transmission of Banana Bunchy Top Virus in Micropropagated Bananas and its Implication for Germplasm Screening. Australian Journal of Agricultural Research., 46 (3). pp. 663-671. https://doi.org/10.1071/AR9950663

Daniells, J. W., Thomas, J. E. and Smith, M. K. (1995) Seed transmission of banana streak virus confirmed. Infomusa, 4 (1). p. 7.

Morris, B. A.M., Richardson, K. A., Haley, A., Zhan, X. and Thomas, J. E. (1992) The nucleotide sequence of the infectious cloned dna component of tobacco yellow dwarf virus reveals features of geminiviruses infecting monocotyledonous plants. Virology, 187 (2). pp. 633-642. https://doi.org/10.1016/0042-6822(92)90466-3

Thomas, J. E. and Dietzgen, R. G. (1991) Purification, characterization and serological detection of virus-like particles associated with banana bunchy top disease in Australia. Journal of General Virology, 72 (2). pp. 217-224. https://doi.org/10.1099/0022-1317-72-2-217

Book Section

Gambley, C. and Thomas, J. E. (2015) Mealybug wilt disease. In: Virus diseases of tropical and subtropical crops. Cabi, Wallingford, UK.

Thomas, J. E., Geering, A. D. W., Dahal, G., Lockhart, B.E.L. and Thottappilly, G. (2003) Banana and plantain. In: Virus and Virus-like Diseases of Major Crops in Developing Countries. Springer, 800 pages. https://doi.org/10.1007/978-94-007-0791-7_19

Conference or Workshop Item

Tran, N. T., Teo, A. C., McTaggart, A. R., Thomas, J. E., Campbell, P. R. and Persley, D. M. (2023) Viruses are associated with buffalo grass yellowing in Australia. In: 12th International Congress of Plant Pathology, 20-25 August 2023, Lyon, France.

Geering, A. D. W., Davis, R., Jones, L., Crew, K. S., Jackson, G. V. H., Sukal, A. C. and Thomas, J. E. (2022) Managing plant biosecurity in the Pacific region. In: TropAg 2022 International Agriculture Conference, 31 October - 2 November 2022, Brisbane, Australia.

Ngo, H., Crew, K. S., Vance, M. E., Thomas, J. E., Nguyen, S., Duarte, T., Coin, L. and Geering, A. (2019) New achievements for diagnostics of banana streak virus. In: Australasian Plant Pathology Society Conference APPS 2019 Strong Foundations, Future Innovations, 25-28 November 2019, Melbourne, Australia.

Cremer, J. E., Campbell, P. R., Steele, V., Hall, Z., Harper, S., Griffin, D., Persley, D. M., Thomas, J. E. and Gambley, C. (2017) Distribution and epidemiology of viruses infecting garlic in Australia. In: Science Protecting Plant Health, 23-29 September 2017, Brisbane.

Sharman, M., Wilson, L. J., Smith, T., Webb, M., Grundy, P. R., Ellis, M. H., Gambley, C., Thomas, J. E., Giband, M., Suassuna, N., Belot, J.-L., Lapbanjob, S. and Warawichanee, K. (2013) Cotton bunchy top virus and other relatives. In: Australian cotton research conference, Narrabri, Australia..