Items where Author is "Kelly, Alison M."

Article

Forknall, C. R., Verbyla, A. P., Nazarathy, Y., Yousif, A., Osama, S., Jones, S. H., Kerr, E., Schulz, B. L., Fox, G. P. and Kelly, A. M. (2024) Covariance Clustering: Modelling Covariance in Designed Experiments When the Number of Variables is Greater than Experimental Units. Journal of Agricultural, Biological and Environmental Statistics, 29 . pp. 232-256. https://doi.org/10.1007/s13253-023-00574-x

Rognoni, B. G., Forknall, C. R., Simpfendorfer, S., Daniel, R., Neale, L. and Kelly, A. M. (2024) Quantifying the resistance of Australian wheat genotypes to Pratylenchus thornei based on a continuous metric from a factor analytic linear mixed model. Euphytica, 220 (9). p. 141. https://doi.org/10.1007/s10681-024-03387-2

Bottomley, P., Sutherland, M. W., Wilson, B. A. L., Rognoni, B., Kelly, A. M. and Percy, C. D. (2024) Soil solarisation delivers near zero levels of Fusarium pseudograminearum in cereal crown rot reference sites. Crop Protection, 185 . p. 106887. https://doi.org/10.1016/j.cropro.2024.106887

Borrell, A. K., Christopher, J. T., Kelly, A. M., Collins, B. and Chenu, K. (2023) Balancing pre- and post-anthesis growth to maximise water-limited yield in cereals. Field Crops Research, 296 . p. 108919. https://doi.org/10.1016/j.fcr.2023.108919

Abdulsada, R. R., Thompson, M., Peitton, L., Kelly, A. M. and Percy, C. D. (2023) Fusarium pseudograminearum infected wheat lines vary in disease severity and gas exchange response under different watering regimes. Plant Pathology, 73 (3). pp. 602-612. https://doi.org/10.1111/ppa.13843

Mumford, M. H., Forknall, C. R., Rodriguez, D., Eyre, J. X. and Kelly, A. M. (2023) Incorporating environmental covariates to explore genotype × environment × management (G × E × M) interactions: A one-stage predictive model. Field Crops Research, 304 . p. 109133. https://doi.org/10.1016/j.fcr.2023.109133

Zheng, Z., Powell, J., Gao, S., Percy, C., Kelly, A. M., Macdonald, B., Zhou, M., Davies, P. and Liu, C. (2022) Investigation of Two QTL Conferring Seedling Resistance to Fusarium Crown Rot in Barley on Reducing Grain Yield Loss under Field Environments. Agronomy, 12 (6). p. 1282. https://doi.org/10.3390/agronomy12061282

Paccapelo, V., Kelly, A. M., Christopher, J. T. and Verbyla, A. P. (2022) WGNAM: whole-genome nested association mapping. Theoretical and Applied Genetics, 135 . pp. 2213-2232. https://doi.org/10.1007/s00122-022-04107-x

Coast, O., Posch, B. C., Rognoni, B. G., Bramley, H., Gaju, O., Mackenzie, J., Pickles, C., Kelly, A. M., Lu, M., Ruan, Y.-L., Trethowan, R. and Atkin, O. K. (2022) Wheat photosystem II heat tolerance: evidence for genotype-by-environment interactions. The Plant Journal, 111 (5). pp. 1368-1382. https://doi.org/10.1111/tpj.15894

Kelly, A. M., Macdonald, B., Percy, C. and Davies, P. (2021) An improved method for selection of wheat genotypes for tolerance to crown rot caused by Fusarium pseudograminearum. Journal of Phytopathology, 169 (6). pp. 339-349. https://doi.org/10.1111/jph.12970

Osama, S. K., Kerr, E. D., Yousif, A. M., Phung, T. K., Kelly, A. M., Fox, G. P. and Schulz, B. L. (2021) Proteomics reveals commitment to germination in barley seeds is marked by loss of stress response proteins and mobilisation of nutrient reservoirs. Journal of Proteomics, 242 . p. 104221. https://doi.org/10.1016/j.jprot.2021.104221

Christopher, M. J., Paccapelo, V., Kelly, A. M., Macdonald, B., Hickey, L., Richard, C., Verbyla, A., Chenu, K., Borrell, A., Amin, A. and Christopher, J. (2021) QTL identified for stay-green in a multi-reference nested association mapping population of wheat exhibit context dependent expression and parent-specific alleles. Field Crops Research, 270 . p. 108181. https://doi.org/10.1016/j.fcr.2021.108181

Reeves, K. L., Forknall, C. R., Kelly, A. M., Owen, K. J., Fanning, J., Hollaway, G. J. and Loughman, R. (2020) A Novel Approach to the Design and Analysis of Field Experiments to Study Variation in the Tolerance and Resistance of Cultivars to Root Lesion Nematodes (Pratylenchus spp.). Phytopathology®, 110 (10). pp. 1623-1631. https://doi.org/10.1094/PHYTO-03-20-0077-R

Chenu, K., Fletcher, A., Ababaei, B., Christopher, J., Kelly, A. M., Hickey, L., Van Oosterom, E. and Hammer, G. (2019) Integrating Crop Modelling, Physiology, Genetics and Breeding to Aid Crop Improvement for Changing Environments in the Australian Wheatbelt. Proceedings, 36 (1). p. 4. https://doi.org/10.3390/proceedings2019036004

Forknall, C. R., Simpfendorfer, S. and Kelly, A. M. (2019) Using yield response curves to measure variation in the tolerance and resistance of wheat cultivars to Fusarium crown rot. Phytopathology, 109 (6). pp. 932-941. https://doi.org/10.1094/PHYTO-09-18-0354-R

Nielsen, S., Russell, K. G., Kelly, A. M. and Fox, G. (2018) A data-driven near infrared calibration process including near infrared spectral thumbprints. Journal of Near Infrared Spectroscopy, 26 (3). pp. 169-185. https://doi.org/10.1177/0967033518782765

Robinson, H., Kelly, A. M., Fox, G., Franckowiak, J., Borrell, A. and Hickey, L. (2018) Root architectural traits and yield: exploring the relationship in barley breeding trials. Euphytica, 214 (9). https://doi.org/10.1007/s10681-018-2219-y

Robinson, H., Kandic, V., Christopher, J., Fox, G., Kelly, A. M., Borrell, A. and Hickey, L. (2018) Root traits for yield improvement in barley. GRDC Update Papers .

Voss-Fels, K. P., Robinson, H., Mudge, S. R., Richard, C., Newman, S., Wittkop, B., Stahl, A., Friedt, W., Frisch, M., Gabur, I., Miller-Cooper, A., Campbell, B. C., Kelly, A. M., Fox, G., Christopher, J., Christopher, M. J., Chenu, K., Franckowiak, J., Mace, E. S., Borrell, A. K., Eagles, H., Jordan, D. R., Botella, J. R., Hammer, G., Godwin, I. D., Trevaskis, B., Snowdon, R. J. and Hickey, L. T. (2018) VERNALIZATION1 Modulates Root System Architecture in Wheat and Barley. Molecular Plant, 11 (1). pp. 226-229. https://doi.org/10.1016/j.molp.2017.10.005

Robinson, H., Hickey, L., Richard, C., Mace, E. S., Kelly, A. M., Borrell, A., Franckowiak, J. and Fox, G. (2016) Genomic regions influencing seminal root traits in barley. The Plant Genome . https://doi.org/10.3835/plantgenome2015.03.0012

Topp, B., Hardner, C. M., Neal, J. M., Kelly, A. M., Russell, D., McConchie, C. and O'Hare, P. (2016) Overview of the Australian macadamia industry breeding program. Acta Horticulturae, 1127 . pp. 45-50. https://doi.org/10.17660/ActaHortic.2016.1127.8

Neal, J. M., Kelly, A. M., Hardner, C. M., McConchie, C. and Topp, B. L. (2016) Preliminary evaluation of macadamia rootstocks for yield and tree height. Acta Horticulturae (1109). https://doi.org/10.17660/ActaHortic.2016.1109.30

Sheedy, J. G., McKay, A. C., Lewis, J., Vanstone, V. A., Fletcher, S., Kelly, A. M. and Thompson, J. P. (2015) Cereal cultivars can be ranked consistently for resistance to root-lesion nematodes (Pratylenchus thornei & P. neglectus) using diverse procedures. Australasian Plant Pathology, 44 (2). pp. 175-182. https://doi.org/10.1007/s13313-014-0333-4

Silcock, R. G., Hall, T. J., Filet, P. G., Kelly, A. M., Osten, D., Schefe, C. M. and Knights, P. T. (2015) Floristic composition and pasture condition of Aristida/Bothriochloa pastures in central Queensland. I. Pasture floristics. Rangeland Journal, 37 (2). pp. 199-215. https://doi.org/10.1071/RJ14106

Silcock, R. G., Hall, T. J., Filet, P. G., Kelly, A. M., Osten, D. and Graham, T. W. G. (2015) Floristic composition and pasture condition of Aristida/Bothriochloa pastures in central Queensland. II. Soil and pasture condition interactions. Rangeland Journal, 37 (2). pp. 217-226. https://doi.org/10.1071/RJ14107

Martin, A., Bovill, W. D., Percy, C. D., Herde, D., Fletcher, S., Kelly, A. M., Neate, S. M. and Sutherland, M. W. (2015) Markers for seedling and adult plant crown rot resistance in four partially resistant bread wheat sources. Theoretical and Applied Genetics, 128 (3). pp. 377-385. https://doi.org/10.1007/s00122-014-2437-1

Betts, N. S., Fox, G. P., Kelly, A. M., Cruickshank, A. W., Lahnstein, J., Henderson, M., Jordan, D. R. and Burton, R. A. (2015) Non-cellulosic cell wall polysaccharides are subject to genotype × environment effects in sorghum (Sorghum bicolor) grain. Journal of Cereal Science, 63 . pp. 64-71.

Fox, G. P., Martin, A., Kelly, A. M., Sutherland, M. W., Martin, D., Banks, P. M. and Sheppard, J. (2013) QTLs for water absorption and flour yield identified in the doubled haploid wheat population Lang/QT8766. Euphytica, 192 (3). pp. 453-462. https://doi.org/10.1007/s10681-013-0885-3

Peake, A. S., Huth, N. I., Kelly, A. M. and Bell, K. L. (2013) Variation in water extraction with maize plant density and its impact on model application. Field Crops Research, 146 . pp. 31-37. https://doi.org/10.1016/j.fcr.2013.02.012

Gous, P. W., Martin, A., Lawson, W., Kelly, A. M., Fox, G. P. and Sutherland, M. W. (2012) Correlation between NIRS generated and chemically measured feed quality data in barley (Hordeum vulgare), and potential use in QTL analysis identification. Euphytica, 188 (3). pp. 325-332. https://doi.org/10.1007/s10681-012-0644-x

Sheedy, J. G., Thompson, J. P. and Kelly, A. M. (2012) Diploid and tetraploid progenitors of wheat are valuable sources of resistance to the root lesion nematode Pratylenchus thornei. Euphytica, 186 (2). pp. 377-391. https://doi.org/10.1007/s10681-011-0617-5

Gous, P. W., Martin, A., Lawson, W., Kelly, A. M., Fox, G. P. and Sutherland, M. W. (2012) QTL associated with barley (Hordeum vulgare) feed quality traits measured through in situ digestion. Euphytica, 185 (1). pp. 37-45. https://doi.org/10.1007/s10681-011-0608-6

Gous, P. W., Martin, A., Lawson, W., Kelly, A. M., Fox, G. P. and Sutherland, M. W. (2012) QTL associated with barley (Hordeum vulgare) feed quality traits measured through in situ digestion. Euphytica, 185 (1). pp. 37-45. https://doi.org/10.1007/s10681-011-0608-6

Topp, B. L., Hardner, C. M. and Kelly, A. M. (2012) Strategies for breeding macadamias in Australia. Acta Horticulturae (935). pp. 47-53. https://doi.org/10.17660/ActaHortic.2012.935.6

Fox, G. P., Kelly, A. M., Sweeney, N. and Hocroft, D. M. (2011) Development of a Single Kernel NIR Barley Protein Calibration and Assessment of Variation in Protein on Grain Quality. Journal of the Institute of Brewing, 117 (4). pp. 582-586. https://doi.org/10.1002/j.2050-0416.2011.tb00507.x

Thompson, J. P., Reen, R. A., Clewett, T. G., Sheedy, J. G., Kelly, A. M., Gogel, B. J. and Knights, E. J. (2011) Hybridisation of Australian chickpea cultivars with wild Cicer spp. increases resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus). Australasian Plant Pathology, 40 . pp. 601-611. https://doi.org/10.1007/s13313-011-0089-z

Kelly, A. M., Cullis, B.R., Gilmour, A.R., Eccleston, J.A. and Thompson, R. (2009) Estimation in a multiplicative mixed model involving a genetic relationship matrix. Genetics Selection Evolution, 41 (1). p. 33. https://doi.org/10.1186/1297-9686-41-33

Mann, G., Diffey, S., Cullis, B., Azanza, F., Martin, D., Kelly, A. M., McIntyre, L., Schmidt, A., Ma, W.J., Nath, Z., Kutty, I., Leyne, P.E., Rampling, L., Quail, K.J. and Morell, M.K. (2009) Genetic control of wheat quality: interactions between chromosomal regions determining protein content and composition, dough rheology, and sponge and dough baking properties. Theoretical and Applied Genetics. TAG, 118 (8). pp. 1519-1537. https://doi.org/10.1007/s00122-009-1000-y

Fox, G., Kelly, A. M., Bowman, J., Inkerman, A., Poulsen, D. and Henry, R. (2009) Is Malting Barley Better Feed for Cattle than Feed Barley? Journal of the Institute of Brewing, 115 (2). pp. 95-104. https://doi.org/10.1002/j.2050-0416.2009.tb00352.x

Fox, G.P., Bowman, J., Kelly, A. M., Inkerman, A., Poulsen, D. and Henry, R. (2008) Assessing for genetic and environmental effects on ruminant feed quality in barley ( Hordeum vulgare ). Euphytica, 163 (2). pp. 249-257. https://doi.org/10.1007/s10681-007-9638-5

Kelly, A. M., Smith, A.B., Eccleston, J.A. and Cullis, B.R. (2008) The accuracy of varietal selection using factor analytic models for multi-environment plant breeding trials. Crop Science, 47 (3). pp. 1063-1070. https://doi.org/10.2135/cropsci2006.08.0540

Fox, G.P., Osborne, B., Bowman, J., Kelly, A. M., Cakir, M., Poulsen, D., Inkerman, A. and Henry, R. (2007) Measurement of genetic and environmental variation in barley (Hordeum vulgare) grain hardness. Journal of Cereal Science, 46 (1). pp. 82-92. https://doi.org/10.1016/j.jcs.2006.12.003

Osborne, B.G., Fox, G.P., Kelly, A. M. and Henry, R.J. (2007) Measurement of Barley Grain Rheology for the Quality Selection of Breeding Material. Journal of the Institute of Brewing, 113 (2). pp. 135-141. https://doi.org/10.1002/j.2050-0416.2007.tb00269.x

Fox, G.P., Kelly, A. M., Poulsen, D., Inkerman, A. and Henry, R. (2006) Selecting for increased barley grain size. Journal of Cereal Science, 43 (2). pp. 198-208. https://doi.org/10.1016/j.jcs.2005.08.004

Fox, G.P., Kelly, A. M., Cakir, M., Bloustein, G., Poulsen, D.M.E., Inkerman, P.A. and Henry, R.J. (2006) Genetic Impacts of the Hull on Barley Grain Quality. Journal of the Institute of Brewing, 112 (2). pp. 101-107.

Lever, T., Kelly, A. M., De Faveri, J., Martin, D., Sheppard, J., Quail, K. and Miskelly, D. (2005) Australian wheat for the sponge and dough bread making process. Australian Journal of Agricultural Research, 56 (10). pp. 1049-1057. https://doi.org/10.1071/AR05113

Tao, Y. Z., Henzell, R. G., Jordan, D. R., Butler, D. G., Kelly, A. M. and McIntyre, C. L. (2000) Identification of genomic regions associated with stay green in sorghum by testing RILs in multiple environments. Theoretical and Applied Genetics, 100 (8). pp. 1225-1232. https://doi.org/10.1007/s001220051428

Wildermuth, G. B., Thomas, G. A., Radford, B. J., McNamara, R. B. and Kelly, A. M. (1997) Crown rot and common root rot in wheat grown under different tillage and stubble treatments in southern Queensland, Australia. Soil and Tillage Research, 44 (3). pp. 211-224. https://doi.org/10.1016/S0167-1987(97)00054-8

Mitchell, J. and Kelly, A. M. (1992) Evaluating Odour Attractants for Control of Wild Dogs. Wildlife Research, 19 (2). pp. 211-219. https://doi.org/10.1071/WR9920211

Cavaye, J., Knight, J., Tierney, T. and Kelly, A. M. (1992) Growth and carcass characteristics of three-way Africander multiply Simmental multiply Hereford crossbreds in south-western Queensland. Australian Journal of Experimental Agriculture, 32 (6). pp. 675-681. https://doi.org/10.1071/EA9920675

Mayer, D. G., Schoorl, D., Butler, D. G. and Kelly, A. M. (1991) Efficiency and fractal behaviour of optimisation methods on multiple-optima surfaces. Agricultural Systems, 36 (3). pp. 315-328. https://doi.org/10.1016/0308-521X(91)90013-Z

Book Section

Kelly, A. M. and Forknall, C. R. (2020) Advanced designs for barley breeding experiments. In: Achieving sustainable cultivation of barley. Burleigh Dodds. https://doi.org/10.19103/AS.2019.0060.06

Kelly, A. M. and Basford, K.E. (2000) Pattern analysis in grassland and animal production systems. In: Field and laboratory methods for grassland and animal production research. CABI, 447 pages. https://doi.org/10.1079/9780851993515.0009

Conference or Workshop Item

Mumford, M. H., Forknall, C. R., Rodriguez, D., Eyre, J., Serafin, L., Aisthorpe, D., Bell, K. L. and Kelly, A. M. (2022) Predictive models incorporating environmental covariates for genotype × environment × management (G×E×M) interactions applied to sorghum agronomy trials. In: Proceedings of the 20th Agronomy Australia Conference, 2022, 6 - 10 February 2022, Toowoomba Qld.

Brunton, D.J., Dhammu, H.S., Wheeler, R.D., Kelly, A. M., Bell, K. L., Lockley, P., Churchett, J. and Walker, S. (2015) Interaction of Genotype, Environment and Herbicides in wheat (Triticum aestivuum L.) and barley (Hordeum vulgare L.) across a range of environments in Australia. In: 17th Australian Agronomy Conference, Hobart, Tasmania.